RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 CSADQ9Y600 493 aa5.9□□□□□ -1.46
CLK3-219ENST00000567805 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.9□□□□□ -1.46
CLK3-219ENST00000567805 GAKO14976 1311 aa5.9□□□□□ -1.47
CLK3-219ENST00000567805 ATAD5Q96QE3 1844 aa5.9□□□□□ -1.47
CLK3-219ENST00000567805 DOCK1Q14185 1865 aa5.9□□□□□ -1.47
CLK3-219ENST00000567805 TESPA1A2RU30 521 aaPredicted RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 SURF6O75683 361 aaKnown RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 TBC1D8O95759 1140 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 UQCRFS1P1P0C7P4 283 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 ARID4AP29374 1257 aaPredicted RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 GJA5P36382 358 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 MAP3K9P80192 1104 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 OS9Q13438 667 aaPredicted RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 VGLL4Q14135 290 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 PKN2Q16513 984 aaKnown RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 OTUD7BQ6GQQ9 843 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 ERICH6Q7L0X2 663 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 CTU1Q7Z7A3 348 aaKnown RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 RASEFQ8IZ41 740 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 SPATA5Q8NB90 893 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 WRNIP1Q96S55 665 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 C1orf115Q9H7X2 142 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 USP40Q9NVE5 1235 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 HMG20BQ9P0W2 317 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 FAM198AQ9UFP1 575 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 ABCF2Q9UG63 623 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 NOP58Q9Y2X3 529 aaKnown RBP5.89□□□□□ -1.47
CLK3-219ENST00000567805 PHIPQ8WWQ0 1821 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 MROH7-TTC4A0A0A0MT08 1334 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 PTPRFP10586 1907 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 RFX7Q2KHR2 1363 aa5.89□□□□□ -1.47
CLK3-219ENST00000567805 SPDYE5A6NIY4 337 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 CCDC85CA6NKD9 419 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 GPR25O00155 361 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 IGF2BP3O00425 579 aaKnown RBP eCLIP5.88□□□□□ -1.47
CLK3-219ENST00000567805 IGSF3O75054 1194 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 FKTNO75072 461 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 ENTPD3O75355 529 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 MAP4K4O95819 1239 aaPredicted RBP5.88□□□□□ -1.47
CLK3-219ENST00000567805 MCAMP43121 646 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 GTF2A2P52657 109 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 GSTO1P78417 241 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 MECOMQ03112 1051 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 TCP10Q12799 353 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 NFIAQ12857 509 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 TNNI3KQ59H18 835 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 CCDC158Q5M9N0 1113 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 TTC39AQ5SRH9 613 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 IER5LQ5T953 404 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 CEP85Q6P2H3 762 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 PI16Q6UXB8 463 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 ERO1BQ86YB8 467 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 PANK1Q8TE04 598 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 ZNF296Q8WUU4 475 aaPredicted RBP5.88□□□□□ -1.47
CLK3-219ENST00000567805 MS4A4AQ96JQ5 239 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 IDI2Q9BXS1 227 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 ZNF341Q9BYN7 854 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 SNCAIPQ9Y6H5 919 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 FPGT-TNNI3KV9GXZ4 949 aa5.88□□□□□ -1.47
CLK3-219ENST00000567805 MYH1P12882 1939 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 MKI67P46013 3256 aaKnown RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 GPR75-ASB3A0A0A6YYF3 556 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 WDHD1O75717 1129 aaPredicted RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 LDHCP07864 332 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 BTDP43251 543 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 RGS3P49796 1198 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 PPATQ06203 517 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 PPIL2Q13356 520 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 HSP90AB4PQ58FF6 505 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 MIGA2Q7L4E1 593 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 ERC1Q8IUD2 1116 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 ZNF384Q8TF68 577 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 SPOCK2Q92563 424 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 ZKSCAN4Q969J2 545 aaPredicted RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 NSUN4Q96CB9 384 aaKnown RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 ZNF512BQ96KM6 892 aaPredicted RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 PTPN18Q99952 460 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 DBNDD2Q9BQY9 259 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 R3HDMLQ9H3Y0 253 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 CHMP4BQ9H444 224 aaKnown RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 ZCCHC17Q9NP64 241 aaKnown RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 RAI14Q9P0K7 980 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 LRP2BPQ9P2M1 347 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 ZNF112Q9UJU3 913 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 RCAN3Q9UKA8 241 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 DDX19BQ9UMR2 479 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 ATRNL1Q5VV63 1379 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 COL2A1P02458 1487 aaPredicted RBP5.87□□□□□ -1.47
CLK3-219ENST00000567805 SIPA1L1O43166 1804 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 MGAMO43451 1857 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 MYH7P12883 1935 aa5.87□□□□□ -1.47
CLK3-219ENST00000567805 RBBP6Q7Z6E9 1792 aaKnown RBP5.86□□□□□ -1.47
CLK3-219ENST00000567805 CCL15-CCL14A0A0B4J2E2 113 aa5.86□□□□□ -1.47
CLK3-219ENST00000567805 IRF6O14896 467 aa5.86□□□□□ -1.47
CLK3-219ENST00000567805 HMMRO75330 724 aa5.86□□□□□ -1.47
CLK3-219ENST00000567805 ECM2O94769 699 aaPredicted RBP5.86□□□□□ -1.47
CLK3-219ENST00000567805 CYP2E1P05181 493 aaPredicted RBP5.86□□□□□ -1.47
CLK3-219ENST00000567805 CETPP11597 493 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms