RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MKRN1Q9UHC7 482 aaKnown RBP23.63■■□□□ 1.37
CLN3-225ENST00000566824 RPAP1Q9BWH6 1393 aaPredicted RBP23.63■■□□□ 1.37
CLN3-225ENST00000566824 USP2O75604 605 aaPredicted RBP23.62■■□□□ 1.37
CLN3-225ENST00000566824 MBD4O95243 580 aa23.62■■□□□ 1.37
CLN3-225ENST00000566824 SUPT20HL1Q3ZLR7 823 aa23.62■■□□□ 1.37
CLN3-225ENST00000566824 TMED8Q6PL24 325 aaPredicted RBP23.62■■□□□ 1.37
CLN3-225ENST00000566824 DNAJC5GQ8N7S2 189 aa23.62■■□□□ 1.37
CLN3-225ENST00000566824 OSBP2Q969R2 916 aa23.62■■□□□ 1.37
CLN3-225ENST00000566824 PPP4R2Q9NY27 417 aa23.62■■□□□ 1.37
CLN3-225ENST00000566824 PRKAB2O43741 272 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 GSPT1P15170 499 aaKnown RBP23.61■■□□□ 1.37
CLN3-225ENST00000566824 PLCG2P16885 1265 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 HUNKP57058 714 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 TTLL12Q14166 644 aaPredicted RBP23.61■■□□□ 1.37
CLN3-225ENST00000566824 ZSCAN25Q6NSZ9 544 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 EVI5LQ96CN4 794 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 SEC62Q99442 399 aaKnown RBP23.61■■□□□ 1.37
CLN3-225ENST00000566824 OSBPL5Q9H0X9 879 aaPredicted RBP23.61■■□□□ 1.37
CLN3-225ENST00000566824 FLT1P17948 1338 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 ATRNL1Q5VV63 1379 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 NAV1Q8NEY1 1877 aa23.61■■□□□ 1.37
CLN3-225ENST00000566824 DDX60LQ5H9U9 1706 aaKnown RBP23.61■■□□□ 1.37
CLN3-225ENST00000566824 TRIM6-TRIM34B2RNG4 842 aa23.6■■□□□ 1.37
CLN3-225ENST00000566824 M0R2C6 588 aa23.6■■□□□ 1.37
CLN3-225ENST00000566824 NPM3O75607 178 aaKnown RBP23.6■■□□□ 1.37
CLN3-225ENST00000566824 NF2P35240 595 aa23.6■■□□□ 1.37
CLN3-225ENST00000566824 ERICH6BQ5W0A0 696 aa23.6■■□□□ 1.37
CLN3-225ENST00000566824 MIGA2Q7L4E1 593 aa23.6■■□□□ 1.37
CLN3-225ENST00000566824 RILPL2Q969X0 211 aa23.6■■□□□ 1.37
CLN3-225ENST00000566824 SAP30BPQ9UHR5 308 aaKnown RBP23.6■■□□□ 1.37
CLN3-225ENST00000566824 ANGEL1Q9UNK9 670 aaKnown RBP23.6■■□□□ 1.37
CLN3-225ENST00000566824 BAZ2AQ9UIF9 1905 aaKnown RBP23.6■■□□□ 1.37
CLN3-225ENST00000566824 RASSF10A6NK89 507 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 TTC22Q5TAA0 569 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 EVX2Q03828 476 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 SLC4A8Q2Y0W8 1093 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 DEFB115Q30KQ5 88 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 CYP4F22Q6NT55 531 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 ZSCAN29Q8IWY8 852 aaPredicted RBP23.59■■□□□ 1.37
CLN3-225ENST00000566824 SDR42E1Q8WUS8 393 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 APPBP2Q92624 585 aa23.59■■□□□ 1.37
CLN3-225ENST00000566824 ZFYP08048 801 aaPredicted RBP23.58■■□□□ 1.36
CLN3-225ENST00000566824 FKBP1BP68106 108 aa23.58■■□□□ 1.36
CLN3-225ENST00000566824 ZMYM1Q5SVZ6 1142 aa23.58■■□□□ 1.36
CLN3-225ENST00000566824 LDLRAD1Q5T700 205 aa23.58■■□□□ 1.36
CLN3-225ENST00000566824 CLMNQ96JQ2 1002 aa23.58■■□□□ 1.36
CLN3-225ENST00000566824 CSRNP1Q96S65 589 aa23.58■■□□□ 1.36
CLN3-225ENST00000566824 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.58■■□□□ 1.36
CLN3-225ENST00000566824 PALD1Q9ULE6 856 aa23.58■■□□□ 1.36
CLN3-225ENST00000566824 FAM196BA6NMK8 535 aa23.57■■□□□ 1.36
CLN3-225ENST00000566824 USP5P45974 858 aa23.57■■□□□ 1.36
CLN3-225ENST00000566824 VEGFBP49765 207 aa23.57■■□□□ 1.36
CLN3-225ENST00000566824 MAP3K11Q16584 847 aa23.57■■□□□ 1.36
CLN3-225ENST00000566824 STRBPQ96SI9 672 aaKnown RBP23.57■■□□□ 1.36
CLN3-225ENST00000566824 COL2A1P02458 1487 aaPredicted RBP23.56■■□□□ 1.36
CLN3-225ENST00000566824 PPP1R12BO60237 982 aaPredicted RBP23.56■■□□□ 1.36
CLN3-225ENST00000566824 CCDC129Q6ZRS4 1044 aa23.56■■□□□ 1.36
CLN3-225ENST00000566824 ARMC9Q7Z3E5 817 aa23.56■■□□□ 1.36
CLN3-225ENST00000566824 AIDAQ96BJ3 306 aa23.56■■□□□ 1.36
CLN3-225ENST00000566824 FAM227BQ96M60 508 aa23.56■■□□□ 1.36
CLN3-225ENST00000566824 CRNKL1Q9BZJ0 848 aaKnown RBP23.56■■□□□ 1.36
CLN3-225ENST00000566824 SDSP20132 328 aa23.55■■□□□ 1.36
CLN3-225ENST00000566824 GRM1Q13255 1194 aa23.55■■□□□ 1.36
CLN3-225ENST00000566824 PAXIP1Q6ZW49 1069 aaPredicted RBP23.55■■□□□ 1.36
CLN3-225ENST00000566824 CERS3Q8IU89 383 aa23.55■■□□□ 1.36
CLN3-225ENST00000566824 A0A0D9SFI3 127 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 SMIM22K7EJ46 135 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 GPAA1O43292 621 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 CYP2D6P10635 497 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 NMIQ13287 307 aaPredicted RBP23.54■■□□□ 1.36
CLN3-225ENST00000566824 RGMBQ6NW40 437 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.54■■□□□ 1.36
CLN3-225ENST00000566824 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-225ENST00000566824 KLRG1Q96E93 195 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 CAPNS2Q96L46 248 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 ZIC5Q96T25 663 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 DCP1AQ9NPI6 582 aaPredicted RBP23.54■■□□□ 1.36
CLN3-225ENST00000566824 SLC4A4Q9Y6R1 1079 aa23.54■■□□□ 1.36
CLN3-225ENST00000566824 FAM155AB1AL88 458 aaPredicted RBP23.53■■□□□ 1.36
CLN3-225ENST00000566824 INPP5BP32019 993 aa23.53■■□□□ 1.36
CLN3-225ENST00000566824 MAP3K10Q02779 954 aa23.53■■□□□ 1.36
CLN3-225ENST00000566824 ZKSCAN4Q969J2 545 aaPredicted RBP23.53■■□□□ 1.36
CLN3-225ENST00000566824 HHIPL1Q96JK4 782 aa23.53■■□□□ 1.36
CLN3-225ENST00000566824 PHF20L1A8MW92 1017 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 AOC2O75106 756 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 IREB2P48200 963 aaKnown RBP23.52■■□□□ 1.36
CLN3-225ENST00000566824 ZNF157P51786 506 aaPredicted RBP23.52■■□□□ 1.36
CLN3-225ENST00000566824 RRP1BQ14684 758 aaKnown RBP23.52■■□□□ 1.36
CLN3-225ENST00000566824 LRRFIP1Q32MZ4 808 aaKnown RBP23.52■■□□□ 1.36
CLN3-225ENST00000566824 RASAL3Q86YV0 1011 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 WRNIP1Q96S55 665 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 ZNF341Q9BYN7 854 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 DNAJC18Q9H819 358 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 ZNF112Q9UJU3 913 aa23.52■■□□□ 1.36
CLN3-225ENST00000566824 WDR33Q9C0J8 1336 aaKnown RBP23.51■■□□□ 1.35
CLN3-225ENST00000566824 CYP2D7A0A087X1C5 515 aa23.51■■□□□ 1.35
CLN3-225ENST00000566824 GSG1L2A8MUP6 293 aa23.51■■□□□ 1.35
CLN3-225ENST00000566824 FOXP2O15409 715 aa23.51■■□□□ 1.35
CLN3-225ENST00000566824 PLCD1P51178 756 aa23.51■■□□□ 1.35
CLN3-225ENST00000566824 DCAF15Q66K64 600 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms