RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ANKRD45Q5TZF3 282 aa12□□□□□ -0.49
CLN3-220ENST00000566040 RGMBQ6NW40 437 aa12□□□□□ -0.49
CLN3-220ENST00000566040 MIGA1Q8NAN2 632 aa12□□□□□ -0.49
CLN3-220ENST00000566040 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12□□□□□ -0.49
CLN3-220ENST00000566040 CNKSR2Q8WXI2 1034 aa12□□□□□ -0.49
CLN3-220ENST00000566040 LNPKQ9C0E8 428 aa12□□□□□ -0.49
CLN3-220ENST00000566040 FLT1P17948 1338 aa12□□□□□ -0.49
CLN3-220ENST00000566040 TTC41PQ6P2S7 1318 aa12□□□□□ -0.49
CLN3-220ENST00000566040 ZNF532Q9HCE3 1301 aa12□□□□□ -0.49
CLN3-220ENST00000566040 PARP14Q460N5 1801 aa12□□□□□ -0.49
CLN3-220ENST00000566040 PHF20L1A8MW92 1017 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 IGSF3O75054 1194 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 MX1P20591 662 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 PDE1AP54750 535 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 TNFAIP1Q13829 316 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 PLEKHM2Q8IWE5 1019 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 LCORLQ8N3X6 602 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 C2orf69Q8N8R5 385 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 OSBPL5Q9H0X9 879 aaPredicted RBP11.99□□□□□ -0.49
CLN3-220ENST00000566040 ZNF112Q9UJU3 913 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 ANGEL1Q9UNK9 670 aaKnown RBP11.99□□□□□ -0.49
CLN3-220ENST00000566040 SNCAIPQ9Y6H5 919 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 HTTP42858 3142 aa11.99□□□□□ -0.49
CLN3-220ENST00000566040 FAM196BA6NMK8 535 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 FOXP2O15409 715 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 MAP4K4O95819 1239 aaPredicted RBP11.98□□□□□ -0.49
CLN3-220ENST00000566040 GSTO1P78417 241 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 JAG1P78504 1218 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 SHROOM1Q2M3G4 852 aaPredicted RBP11.98□□□□□ -0.49
CLN3-220ENST00000566040 B4GALNT3Q6L9W6 998 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 CHD1LQ86WJ1 897 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 KBTBD3Q8NAB2 608 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 CASP8AP2Q9UKL3 1982 aa11.98□□□□□ -0.49
CLN3-220ENST00000566040 LDHCP07864 332 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 INPP5BP32019 993 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 TNNI2P48788 182 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 PICALMQ13492 652 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 VGLL4Q14135 290 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 SLC9C2Q5TAH2 1124 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 METTL16Q86W50 562 aaKnown RBP11.97□□□□□ -0.49
CLN3-220ENST00000566040 SKAP1Q86WV1 359 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 SLF2Q8IX21 1173 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 TEX11Q8IYF3 940 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 PUS7LQ9H0K6 701 aaKnown RBP11.97□□□□□ -0.49
CLN3-220ENST00000566040 RWDD1Q9H446 243 aaPredicted RBP11.97□□□□□ -0.49
CLN3-220ENST00000566040 WBP1LQ9NX94 342 aa11.97□□□□□ -0.49
CLN3-220ENST00000566040 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.97□□□□□ -0.49
CLN3-220ENST00000566040 RLFQ13129 1914 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 PRKAB2O43741 272 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 MAP3K12Q12852 859 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 TTF1Q15361 905 aaPredicted RBP11.96□□□□□ -0.49
CLN3-220ENST00000566040 UBE3CQ15386 1083 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 SUPT20HL1Q3ZLR7 823 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 SPRYD7Q5W111 196 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 MIGA2Q7L4E1 593 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 MAPKAPK5Q8IW41 473 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 TGFBRAP1Q8WUH2 860 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 ZKSCAN4Q969J2 545 aaPredicted RBP11.96□□□□□ -0.49
CLN3-220ENST00000566040 OSBP2Q969R2 916 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 WNK4Q96J92 1243 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 OSBPL3Q9H4L5 887 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 TMOD2Q9NZR1 351 aa11.96□□□□□ -0.49
CLN3-220ENST00000566040 M0R2C6 588 aa11.95□□□□□ -0.5
CLN3-220ENST00000566040 FOXN1O15353 648 aa11.95□□□□□ -0.5
CLN3-220ENST00000566040 GLRX3O76003 335 aaKnown RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 HSPA1AP0DMV8 641 aaKnown RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 HSPA1BP0DMV9 641 aaKnown RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 ZNF157P51786 506 aaPredicted RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 KIF23Q02241 960 aaPredicted RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 TMED8Q6PL24 325 aaPredicted RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 CSRNP1Q96S65 589 aa11.95□□□□□ -0.5
CLN3-220ENST00000566040 SEC62Q99442 399 aaKnown RBP11.95□□□□□ -0.5
CLN3-220ENST00000566040 ARMT1Q9H993 441 aa11.95□□□□□ -0.5
CLN3-220ENST00000566040 MBD4O95243 580 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 CYP2D6P10635 497 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 GSPT1P15170 499 aaKnown RBP11.94□□□□□ -0.5
CLN3-220ENST00000566040 NF2P35240 595 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 MAP2K2P36507 400 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 GRM1Q13255 1194 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 MOGSQ13724 837 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 NOL9Q5SY16 702 aaKnown RBP11.94□□□□□ -0.5
CLN3-220ENST00000566040 ARMC9Q7Z3E5 817 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 SDR42E1Q8WUS8 393 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 MS4A4AQ96JQ5 239 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 ELP3Q9H9T3 547 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 EPB41L4AQ9HCS5 686 aaPredicted RBP11.94□□□□□ -0.5
CLN3-220ENST00000566040 PALD1Q9ULE6 856 aa11.94□□□□□ -0.5
CLN3-220ENST00000566040 MGAMO43451 1857 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 MAGEB6P1A0A0J9YX57 407 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 SPDYE5A6NIY4 337 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 UNCXA6NJT0 531 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 ECE1P42892 770 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 MAP3K9P80192 1104 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 GABPAQ06546 454 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 MKRN3Q13064 507 aaKnown RBP11.93□□□□□ -0.5
CLN3-220ENST00000566040 NOGQ13253 232 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 TTLL12Q14166 644 aaPredicted RBP11.93□□□□□ -0.5
CLN3-220ENST00000566040 ZMYM1Q5SVZ6 1142 aa11.93□□□□□ -0.5
CLN3-220ENST00000566040 CCDC84Q86UT8 332 aaPredicted RBP11.93□□□□□ -0.5
CLN3-220ENST00000566040 ANKRD13AQ8IZ07 590 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms