RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ERICH6Q7L0X2 663 aa21.15■□□□□ 0.98
CLN3-216ENST00000565316 CLUAP1Q96AJ1 413 aa21.15■□□□□ 0.98
CLN3-216ENST00000565316 NEUROD6Q96NK8 337 aa21.15■□□□□ 0.98
CLN3-216ENST00000565316 DDX4Q9NQI0 724 aaKnown RBP21.15■□□□□ 0.98
CLN3-216ENST00000565316 MKI67P46013 3256 aaKnown RBP21.14■□□□□ 0.98
CLN3-216ENST00000565316 NPM3O75607 178 aaKnown RBP21.14■□□□□ 0.97
CLN3-216ENST00000565316 ARID4AP29374 1257 aaPredicted RBP21.14■□□□□ 0.97
CLN3-216ENST00000565316 RHBDL3P58872 404 aa21.14■□□□□ 0.97
CLN3-216ENST00000565316 G3BP1Q13283 466 aaKnown RBP eCLIP21.14■□□□□ 0.97
CLN3-216ENST00000565316 SLC9C1Q4G0N8 1177 aa21.14■□□□□ 0.97
CLN3-216ENST00000565316 NBPF11Q86T75 865 aa21.14■□□□□ 0.97
CLN3-216ENST00000565316 SPATA5Q8NB90 893 aa21.14■□□□□ 0.97
CLN3-216ENST00000565316 AK9Q5TCS8 1911 aa21.13■□□□□ 0.97
CLN3-216ENST00000565316 DDTLA6NHG4 134 aaPredicted RBP21.13■□□□□ 0.97
CLN3-216ENST00000565316 MAP4K4O95819 1239 aaPredicted RBP21.13■□□□□ 0.97
CLN3-216ENST00000565316 PRMT2P55345 433 aa21.13■□□□□ 0.97
CLN3-216ENST00000565316 ZKSCAN2Q63HK3 967 aa21.13■□□□□ 0.97
CLN3-216ENST00000565316 GPAT2Q6NUI2 795 aa21.13■□□□□ 0.97
CLN3-216ENST00000565316 SCYL3Q8IZE3 742 aa21.13■□□□□ 0.97
CLN3-216ENST00000565316 TMEM57Q8N5G2 664 aa21.13■□□□□ 0.97
CLN3-216ENST00000565316 BRCA2P51587 3418 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 PTPRAP18433 802 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 EN2P19622 333 aaPredicted RBP21.12■□□□□ 0.97
CLN3-216ENST00000565316 POLA2Q14181 598 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 GORABQ5T7V8 394 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 PI16Q6UXB8 463 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 NSUN4Q96CB9 384 aaKnown RBP21.12■□□□□ 0.97
CLN3-216ENST00000565316 PICK1Q9NRD5 415 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 CPA4Q9UI42 421 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 DOCK2Q92608 1830 aa21.12■□□□□ 0.97
CLN3-216ENST00000565316 A0A0G2JLL6 359 aaPredicted RBP21.11■□□□□ 0.97
CLN3-216ENST00000565316 CTNND1O60716 968 aaKnown RBP21.11■□□□□ 0.97
CLN3-216ENST00000565316 CTGFP29279 349 aa21.11■□□□□ 0.97
CLN3-216ENST00000565316 GSTO1P78417 241 aa21.11■□□□□ 0.97
CLN3-216ENST00000565316 PRRT2Q7Z6L0 340 aaPredicted RBP21.11■□□□□ 0.97
CLN3-216ENST00000565316 ZSCAN29Q8IWY8 852 aaPredicted RBP21.11■□□□□ 0.97
CLN3-216ENST00000565316 TMEM106CQ9BVX2 250 aa21.11■□□□□ 0.97
CLN3-216ENST00000565316 GPR108Q9NPR9 543 aa21.11■□□□□ 0.97
CLN3-216ENST00000565316 AFG3L2Q9Y4W6 797 aa21.11■□□□□ 0.97
CLN3-216ENST00000565316 ZHX2Q9Y6X8 837 aa21.11■□□□□ 0.97
CLN3-216ENST00000565316 TBC1D12O60347 775 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 LDHCP07864 332 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 MCAMP43121 646 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 PICALMQ13492 652 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 TBC1D9Q6ZT07 1266 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 SSH3Q8TE77 659 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 TRIM47Q96LD4 638 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 ZSWIM8A7E2V4 1837 aa21.1■□□□□ 0.97
CLN3-216ENST00000565316 UQCRFS1P1P0C7P4 283 aa21.09■□□□□ 0.97
CLN3-216ENST00000565316 SLURP2P0DP57 97 aa21.09■□□□□ 0.97
CLN3-216ENST00000565316 PSMC4P43686 418 aa21.09■□□□□ 0.97
CLN3-216ENST00000565316 FASTKD5Q7L8L6 764 aaKnown RBP21.09■□□□□ 0.97
CLN3-216ENST00000565316 PARK7Q99497 189 aaKnown RBP21.09■□□□□ 0.97
CLN3-216ENST00000565316 SRRDQ9UH36 339 aa21.09■□□□□ 0.97
CLN3-216ENST00000565316 BCRP11274 1271 aa21.08■□□□□ 0.97
CLN3-216ENST00000565316 ATP8B2P98198 1209 aa21.08■□□□□ 0.97
CLN3-216ENST00000565316 SLC45A1Q9Y2W3 748 aa21.08■□□□□ 0.97
CLN3-216ENST00000565316 COL2A1P02458 1487 aaPredicted RBP21.08■□□□□ 0.96
CLN3-216ENST00000565316 SH3TC2Q8TF17 1288 aa21.07■□□□□ 0.96
CLN3-216ENST00000565316 RAI14Q9P0K7 980 aa21.07■□□□□ 0.96
CLN3-216ENST00000565316 CYP2C8P10632 490 aa21.06■□□□□ 0.96
CLN3-216ENST00000565316 HOXD10P28358 340 aa21.06■□□□□ 0.96
CLN3-216ENST00000565316 TNNI3KQ59H18 835 aa21.06■□□□□ 0.96
CLN3-216ENST00000565316 FPGT-TNNI3KV9GXZ4 949 aa21.06■□□□□ 0.96
CLN3-216ENST00000565316 OSBPP22059 807 aa21.05■□□□□ 0.96
CLN3-216ENST00000565316 LRP2BPQ9P2M1 347 aa21.05■□□□□ 0.96
CLN3-216ENST00000565316 NOP58Q9Y2X3 529 aaKnown RBP21.05■□□□□ 0.96
CLN3-216ENST00000565316 FMNL1O95466 1100 aaPredicted RBP21.04■□□□□ 0.96
CLN3-216ENST00000565316 HNRNPUQ00839 825 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-216ENST00000565316 SLC4A8Q2Y0W8 1093 aa21.04■□□□□ 0.96
CLN3-216ENST00000565316 ZNF512BQ96KM6 892 aaPredicted RBP21.04■□□□□ 0.96
CLN3-216ENST00000565316 OSBPL5Q9H0X9 879 aaPredicted RBP21.04■□□□□ 0.96
CLN3-216ENST00000565316 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-216ENST00000565316 DOCK1Q14185 1865 aa21.04■□□□□ 0.96
CLN3-216ENST00000565316 ZBTB7BO15156 539 aaPredicted RBP21.04■□□□□ 0.96
CLN3-216ENST00000565316 GADL1Q6ZQY3 521 aa21.04■□□□□ 0.96
CLN3-216ENST00000565316 MIER1Q8N108 512 aa21.04■□□□□ 0.96
CLN3-216ENST00000565316 DBNDD2Q9BQY9 259 aa21.04■□□□□ 0.96
CLN3-216ENST00000565316 PHIPQ8WWQ0 1821 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 TRIM75PA6NK02 468 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 IGSF3O75054 1194 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 SURF6O75683 361 aaKnown RBP21.03■□□□□ 0.96
CLN3-216ENST00000565316 RLBP1P12271 317 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 PPP4CP60510 307 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 CCDC158Q5M9N0 1113 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 TTC39AQ5SRH9 613 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 TEX11Q8IYF3 940 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 GCC1Q96CN9 775 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 SNRKQ9NRH2 765 aa21.03■□□□□ 0.96
CLN3-216ENST00000565316 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.03■□□□□ 0.96
CLN3-216ENST00000565316 MYPNQ86TC9 1320 aa21.02■□□□□ 0.96
CLN3-216ENST00000565316 FAM196BA6NMK8 535 aa21.02■□□□□ 0.95
CLN3-216ENST00000565316 ECM2O94769 699 aaPredicted RBP21.02■□□□□ 0.95
CLN3-216ENST00000565316 FCGRTP55899 365 aa21.02■□□□□ 0.95
CLN3-216ENST00000565316 OS9Q13438 667 aaPredicted RBP21.02■□□□□ 0.95
CLN3-216ENST00000565316 FTSJ3Q8IY81 847 aaKnown RBP21.02■□□□□ 0.95
CLN3-216ENST00000565316 RAET1EQ8TD07 263 aa21.02■□□□□ 0.95
CLN3-216ENST00000565316 SH3RF3Q8TEJ3 882 aaPredicted RBP21.02■□□□□ 0.95
CLN3-216ENST00000565316 C1orf115Q9H7X2 142 aa21.02■□□□□ 0.95
CLN3-216ENST00000565316 PTPRFP10586 1907 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms