RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 GORABQ5T7V8 394 aa21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 ANKRD23Q86SG2 305 aa21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 ARMC5Q96C12 935 aa21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 NSUN4Q96CB9 384 aaKnown RBP21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 ZBED9Q6R2W3 1325 aa21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 CXCL11O14625 94 aa21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 LDHCP07864 332 aa21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 GSTO1P78417 241 aa21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 MOGSQ13724 837 aa21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 DDX4Q9NQI0 724 aaKnown RBP21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 NOP58Q9Y2X3 529 aaKnown RBP21.21■□□□□ 0.99
VPS9D1-203ENST00000563798 DDTLA6NHG4 134 aaPredicted RBP21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 IGSF3O75054 1194 aa21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 RLBP1P12271 317 aa21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 MCAMP43121 646 aa21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 PI16Q6UXB8 463 aa21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 FTSJ3Q8IY81 847 aaKnown RBP21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 ZNF512BQ96KM6 892 aaPredicted RBP21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 DOCK2Q92608 1830 aa21.2■□□□□ 0.98
VPS9D1-203ENST00000563798 TBC1D12O60347 775 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 TNNI3KQ59H18 835 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 C17orf99Q6UX52 265 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 TBC1D9Q6ZT07 1266 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 SCYL3Q8IZE3 742 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 FPGT-TNNI3KV9GXZ4 949 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 AK9Q5TCS8 1911 aa21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 COL2A1P02458 1487 aaPredicted RBP21.19■□□□□ 0.98
VPS9D1-203ENST00000563798 GNRH1P01148 92 aa21.18■□□□□ 0.98
VPS9D1-203ENST00000563798 LACTBP83111 547 aaPredicted RBP21.18■□□□□ 0.98
VPS9D1-203ENST00000563798 ADGRA2Q96PE1 1338 aa21.18■□□□□ 0.98
VPS9D1-203ENST00000563798 CTNND1O60716 968 aaKnown RBP21.17■□□□□ 0.98
VPS9D1-203ENST00000563798 SURF6O75683 361 aaKnown RBP21.17■□□□□ 0.98
VPS9D1-203ENST00000563798 PTPRAP18433 802 aa21.17■□□□□ 0.98
VPS9D1-203ENST00000563798 ITPRIPQ8IWB1 547 aa21.17■□□□□ 0.98
VPS9D1-203ENST00000563798 ZSCAN29Q8IWY8 852 aaPredicted RBP21.17■□□□□ 0.98
VPS9D1-203ENST00000563798 PDHXO00330 501 aa21.16■□□□□ 0.98
VPS9D1-203ENST00000563798 CCDC158Q5M9N0 1113 aa21.16■□□□□ 0.98
VPS9D1-203ENST00000563798 GPAT2Q6NUI2 795 aa21.16■□□□□ 0.98
VPS9D1-203ENST00000563798 DBNDD2Q9BQY9 259 aa21.16■□□□□ 0.98
VPS9D1-203ENST00000563798 RAI14Q9P0K7 980 aa21.16■□□□□ 0.98
VPS9D1-203ENST00000563798 PDE4DIPQ5VU43 2346 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 A0A0G2JLL6 359 aaPredicted RBP21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 PRMT2P55345 433 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 PICALMQ13492 652 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 KIF22Q14807 665 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 PRRT2Q7Z6L0 340 aaPredicted RBP21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 C1orf115Q9H7X2 142 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 PICK1Q9NRD5 415 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 PCDH10Q9P2E7 1040 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 LRP2BPQ9P2M1 347 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 AFG3L2Q9Y4W6 797 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 ZHX2Q9Y6X8 837 aa21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 RBBP6Q7Z6E9 1792 aaKnown RBP21.15■□□□□ 0.98
VPS9D1-203ENST00000563798 OS9Q13438 667 aaPredicted RBP21.14■□□□□ 0.97
VPS9D1-203ENST00000563798 TTC39AQ5SRH9 613 aa21.14■□□□□ 0.97
VPS9D1-203ENST00000563798 FASTKD5Q7L8L6 764 aaKnown RBP21.14■□□□□ 0.97
VPS9D1-203ENST00000563798 ZNF333Q96JL9 665 aa21.14■□□□□ 0.97
VPS9D1-203ENST00000563798 PPP4CP60510 307 aa21.13■□□□□ 0.97
VPS9D1-203ENST00000563798 CEP85Q6P2H3 762 aa21.13■□□□□ 0.97
VPS9D1-203ENST00000563798 ARHGAP39Q9C0H5 1083 aa21.13■□□□□ 0.97
VPS9D1-203ENST00000563798 OSBPL5Q9H0X9 879 aaPredicted RBP21.13■□□□□ 0.97
VPS9D1-203ENST00000563798 SLC45A1Q9Y2W3 748 aa21.13■□□□□ 0.97
VPS9D1-203ENST00000563798 PTCH2Q9Y6C5 1203 aa21.13■□□□□ 0.97
VPS9D1-203ENST00000563798 POTEFA5A3E0 1075 aa21.12■□□□□ 0.97
VPS9D1-203ENST00000563798 CYP2E1P05181 493 aaPredicted RBP21.12■□□□□ 0.97
VPS9D1-203ENST00000563798 SLURP2P0DP57 97 aa21.12■□□□□ 0.97
VPS9D1-203ENST00000563798 NBPF11Q86T75 865 aa21.12■□□□□ 0.97
VPS9D1-203ENST00000563798 PARK7Q99497 189 aaKnown RBP21.12■□□□□ 0.97
VPS9D1-203ENST00000563798 DBNLQ9UJU6 430 aaKnown RBP21.12■□□□□ 0.97
VPS9D1-203ENST00000563798 BAG3O95817 575 aa21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 BCRP11274 1271 aa21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 PRPF38BQ5VTL8 546 aaKnown RBP21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 NAA16Q6N069 864 aaPredicted RBP21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 EAF2Q96CJ1 260 aaPredicted RBP21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 SNRKQ9NRH2 765 aa21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 CPA4Q9UI42 421 aa21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 DOCK1Q14185 1865 aa21.11■□□□□ 0.97
VPS9D1-203ENST00000563798 MAST2Q6P0Q8 1798 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 MS4A1P11836 297 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 PLCG2P16885 1265 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 CTGFP29279 349 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 SLC9C1Q4G0N8 1177 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 TEX11Q8IYF3 940 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 SH3RF3Q8TEJ3 882 aaPredicted RBP21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 DHX36Q9H2U1 1008 aaKnown RBP21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 CENPFP49454 3210 aa21.1■□□□□ 0.97
VPS9D1-203ENST00000563798 PHIPQ8WWQ0 1821 aa21.09■□□□□ 0.97
VPS9D1-203ENST00000563798 PANK1Q8TE04 598 aa21.09■□□□□ 0.97
VPS9D1-203ENST00000563798 NOL10Q9BSC4 688 aaKnown RBP21.09■□□□□ 0.97
VPS9D1-203ENST00000563798 TBC1D2Q9BYX2 928 aa21.09■□□□□ 0.97
VPS9D1-203ENST00000563798 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.09■□□□□ 0.975e-7■■■■■ 50.5
VPS9D1-203ENST00000563798 HERC5Q9UII4 1024 aaKnown RBP21.09■□□□□ 0.97
VPS9D1-203ENST00000563798 ZAP70P43403 619 aa21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 PSMC4P43686 418 aa21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 TMED8Q6PL24 325 aaPredicted RBP21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 ADGRA1Q86SQ6 560 aa21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 METTL16Q86W50 562 aaKnown RBP21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 ERC1Q8IUD2 1116 aa21.08■□□□□ 0.97
VPS9D1-203ENST00000563798 TRIM47Q96LD4 638 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms