RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 FKBP1CQ5VVH2 108 aa19.82■□□□□ 0.76
VPS4A-202ENST00000562754 GIMAP6Q6P9H5 292 aa19.82■□□□□ 0.76
VPS4A-202ENST00000562754 USP50Q70EL3 339 aaPredicted RBP19.82■□□□□ 0.76
VPS4A-202ENST00000562754 ZFPM1Q8IX07 1006 aa19.82■□□□□ 0.76
VPS4A-202ENST00000562754 ZNF526Q8TF50 670 aaPredicted RBP19.82■□□□□ 0.76
VPS4A-202ENST00000562754 NMRK2Q9NPI5 230 aa19.82■□□□□ 0.76
VPS4A-202ENST00000562754 GGA3Q9NZ52 723 aa19.82■□□□□ 0.76
VPS4A-202ENST00000562754 POLR2AP24928 1970 aaKnown RBP19.82■□□□□ 0.76
VPS4A-202ENST00000562754 COL2A1P02458 1487 aaPredicted RBP19.81■□□□□ 0.76
VPS4A-202ENST00000562754 TCP10L2B9ZVM9 353 aa19.81■□□□□ 0.76
VPS4A-202ENST00000562754 NPM3O75607 178 aaKnown RBP19.81■□□□□ 0.76
VPS4A-202ENST00000562754 TDO2P48775 406 aa19.81■□□□□ 0.76
VPS4A-202ENST00000562754 ANGEL2Q5VTE6 544 aaKnown RBP19.81■□□□□ 0.76
VPS4A-202ENST00000562754 NACAP1Q9BZK3 213 aa19.81■□□□□ 0.76
VPS4A-202ENST00000562754 OSBPL5Q9H0X9 879 aaPredicted RBP19.81■□□□□ 0.76
VPS4A-202ENST00000562754 NAPBQ9H115 298 aa19.81■□□□□ 0.76
VPS4A-202ENST00000562754 RRAGCQ9HB90 399 aa19.81■□□□□ 0.76
VPS4A-202ENST00000562754 SAP30BPQ9UHR5 308 aaKnown RBP19.81■□□□□ 0.76
VPS4A-202ENST00000562754 U3KPZ7 1027 aaPredicted RBP19.81■□□□□ 0.76
VPS4A-202ENST00000562754 CYP2D7A0A087X1C5 515 aa19.8■□□□□ 0.76
VPS4A-202ENST00000562754 EPB41L2O43491 1005 aaKnown RBP19.8■□□□□ 0.76
VPS4A-202ENST00000562754 EIF5BO60841 1220 aaKnown RBP19.8■□□□□ 0.76
VPS4A-202ENST00000562754 ENTPD3O75355 529 aa19.8■□□□□ 0.76
VPS4A-202ENST00000562754 CYP2D6P10635 497 aa19.8■□□□□ 0.76
VPS4A-202ENST00000562754 EVX2Q03828 476 aa19.8■□□□□ 0.76
VPS4A-202ENST00000562754 TCP10Q12799 353 aa19.8■□□□□ 0.76
VPS4A-202ENST00000562754 MCM9Q9NXL9 1143 aa19.8■□□□□ 0.76
VPS4A-202ENST00000562754 SCAF8Q9UPN6 1271 aaKnown RBP19.8■□□□□ 0.76
VPS4A-202ENST00000562754 SMIM22K7EJ46 135 aa19.79■□□□□ 0.76
VPS4A-202ENST00000562754 VEGFAP15692 232 aaPredicted RBP19.79■□□□□ 0.76
VPS4A-202ENST00000562754 CTR9Q6PD62 1173 aa19.79■□□□□ 0.76
VPS4A-202ENST00000562754 SH3BP5LQ7L8J4 393 aa19.79■□□□□ 0.76
VPS4A-202ENST00000562754 PITPNM2Q9BZ72 1349 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 USP17L12C9JPN9 530 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 USP17L21D6R901 530 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 POTEIP0CG38 1075 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 POTEJP0CG39 1038 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 NECTIN1Q15223 517 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 SLC4A8Q2Y0W8 1093 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 SBK1Q52WX2 424 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 EAPPQ56P03 285 aaPredicted RBP19.78■□□□□ 0.76
VPS4A-202ENST00000562754 FAM83AQ86UY5 434 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 APOBEC3FQ8IUX4 373 aaKnown RBP19.78■□□□□ 0.76
VPS4A-202ENST00000562754 DDRGK1Q96HY6 314 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 NBPF3Q9H094 633 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 ARPP21Q9UBL0 812 aaPredicted RBP19.78■□□□□ 0.76
VPS4A-202ENST00000562754 PALD1Q9ULE6 856 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 TAF6LQ9Y6J9 622 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 ATRNL1Q5VV63 1379 aa19.78■□□□□ 0.76
VPS4A-202ENST00000562754 SLC27A2O14975 620 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 HSPA4P34932 840 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 HAND2P61296 217 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 CREB3L3Q68CJ9 461 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 PNMA8AQ86V59 439 aaPredicted RBP19.77■□□□□ 0.76
VPS4A-202ENST00000562754 CDAN1Q8IWY9 1227 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 FAM151AQ8WW52 585 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 PGAP2Q9UHJ9 254 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 CTNNA3Q9UI47 895 aa19.77■□□□□ 0.76
VPS4A-202ENST00000562754 ROBO3Q96MS0 1386 aa19.76■□□□□ 0.75
VPS4A-202ENST00000562754 DDTLA6NHG4 134 aaPredicted RBP19.76■□□□□ 0.75
VPS4A-202ENST00000562754 CYP21A2P08686 494 aa19.76■□□□□ 0.75
VPS4A-202ENST00000562754 TNFAIP1Q13829 316 aa19.76■□□□□ 0.75
VPS4A-202ENST00000562754 RASA3Q14644 834 aa19.76■□□□□ 0.75
VPS4A-202ENST00000562754 C12orf60Q5U649 245 aa19.76■□□□□ 0.75
VPS4A-202ENST00000562754 ZC3H15Q8WU90 426 aaKnown RBP19.76■□□□□ 0.75
VPS4A-202ENST00000562754 TMEM39BQ9GZU3 492 aa19.76■□□□□ 0.75
VPS4A-202ENST00000562754 MINDY4BA8MYZ0 360 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 TNNI2P48788 182 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 PLCD1P51178 756 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 PPARAQ07869 468 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 TBC1D10CQ8IV04 446 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 RASEFQ8IZ41 740 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 KCNB2Q92953 911 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 TEPSINQ96N21 525 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 TACC3Q9Y6A5 838 aa19.75■□□□□ 0.75
VPS4A-202ENST00000562754 POLR3DP05423 398 aaPredicted RBP19.74■□□□□ 0.75
VPS4A-202ENST00000562754 CTDSPL2Q05D32 466 aa19.74■□□□□ 0.75
VPS4A-202ENST00000562754 IMMTQ16891 758 aaKnown RBP19.74■□□□□ 0.75
VPS4A-202ENST00000562754 DEFB129Q9H1M3 183 aa19.74■□□□□ 0.75
VPS4A-202ENST00000562754 ANAPC4Q9UJX5 808 aa19.74■□□□□ 0.75
VPS4A-202ENST00000562754 ADM5C9JUS6 153 aa19.73■□□□□ 0.75
VPS4A-202ENST00000562754 SLURP2P0DP57 97 aa19.73■□□□□ 0.75
VPS4A-202ENST00000562754 STOX1Q6ZVD7 989 aa19.73■□□□□ 0.75
VPS4A-202ENST00000562754 ZSCAN29Q8IWY8 852 aaPredicted RBP19.73■□□□□ 0.75
VPS4A-202ENST00000562754 DCPSQ96C86 337 aaKnown RBP19.73■□□□□ 0.75
VPS4A-202ENST00000562754 TBC1D32Q96NH3 1257 aa19.73■□□□□ 0.75
VPS4A-202ENST00000562754 C22orf23Q9BZE7 217 aa19.73■□□□□ 0.75
VPS4A-202ENST00000562754 UPF2Q9HAU5 1272 aaKnown RBP19.73■□□□□ 0.75
VPS4A-202ENST00000562754 SSC5DA1L4H1 1573 aa19.73■□□□□ 0.75
VPS4A-202ENST00000562754 MYH8P13535 1937 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 ZNF213O14771 459 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 MCCP23508 829 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 DLK2Q6UY11 383 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 TTC6Q86TZ1 520 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 AMOTL1Q8IY63 956 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 DYNLL2Q96FJ2 89 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 DHX36Q9H2U1 1008 aaKnown RBP19.72■□□□□ 0.75
VPS4A-202ENST00000562754 SNX14Q9Y5W7 946 aa19.72■□□□□ 0.75
VPS4A-202ENST00000562754 HLA-DOAP06340 250 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 RBM25P49756 843 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms