RNA–Protein interactions for RNA: ENST00000561187.1

SNRPA1-215, Transcript of small nuclear ribonucleoprotein polypeptide A', human

TSL 2

Gene SNRPA1, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRPA1-215	ENST00000561187	NOL9	Q5SY16	702 aa	Known RBP	33.4	■■■□□ 2.94
SNRPA1-215	ENST00000561187	C1orf115	Q9H7X2	142 aa		33.4	■■■□□ 2.94
SNRPA1-215	ENST00000561187	DDTL	A6NHG4	134 aa	Predicted RBP	33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	ENTPD3	O75355	529 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	LACTB	P83111	547 aa	Predicted RBP	33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	KIF22	Q14807	665 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	ARHGEF6	Q15052	776 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	ZKSCAN2	Q63HK3	967 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	SLF2	Q8IX21	1173 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	ZNF384	Q8TF68	577 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	ZCCHC17	Q9NP64	241 aa	Known RBP	33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	KCNH4	Q9UQ05	1017 aa		33.39	■■■□□ 2.94
SNRPA1-215	ENST00000561187	SPATA5	Q8NB90	893 aa		33.38	■■■□□ 2.93
SNRPA1-215	ENST00000561187	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	33.38	■■■□□ 2.93
SNRPA1-215	ENST00000561187	EN2	P19622	333 aa	Predicted RBP	33.37	■■■□□ 2.93
SNRPA1-215	ENST00000561187	ANKRD23	Q86SG2	305 aa		33.37	■■■□□ 2.93
SNRPA1-215	ENST00000561187	RBBP6	Q7Z6E9	1792 aa	Known RBP	33.37	■■■□□ 2.93
SNRPA1-215	ENST00000561187	MOGS	Q13724	837 aa		33.36	■■■□□ 2.93
SNRPA1-215	ENST00000561187	MIER1	Q8N108	512 aa		33.36	■■■□□ 2.93
SNRPA1-215	ENST00000561187	SH3TC2	Q8TF17	1288 aa		33.36	■■■□□ 2.93
SNRPA1-215	ENST00000561187	ZNF333	Q96JL9	665 aa		33.36	■■■□□ 2.93
SNRPA1-215	ENST00000561187	PICK1	Q9NRD5	415 aa		33.36	■■■□□ 2.93
SNRPA1-215	ENST00000561187	RAI14	Q9P0K7	980 aa		33.36	■■■□□ 2.93
SNRPA1-215	ENST00000561187	FAM196B	A6NMK8	535 aa		33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	PHF20L1	A8MW92	1017 aa		33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	ZBTB22	O15209	634 aa		33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	OS9	Q13438	667 aa	Predicted RBP	33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	CCDC84	Q86UT8	332 aa	Predicted RBP	33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	SCYL3	Q8IZE3	742 aa		33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	ZHX2	Q9Y6X8	837 aa		33.35	■■■□□ 2.93
SNRPA1-215	ENST00000561187	CTGF	P29279	349 aa		33.34	■■■□□ 2.93
SNRPA1-215	ENST00000561187	MCAM	P43121	646 aa		33.34	■■■□□ 2.93
SNRPA1-215	ENST00000561187	CYP2C8	P10632	490 aa		33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	ARID4A	P29374	1257 aa	Predicted RBP	33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	RHBDL3	P58872	404 aa		33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	C17orf99	Q6UX52	265 aa		33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	FAM163A	Q96GL9	167 aa	Predicted RBP	33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	TMEM106C	Q9BVX2	250 aa		33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	SNRK	Q9NRH2	765 aa		33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	DOCK1	Q14185	1865 aa		33.33	■■■□□ 2.93
SNRPA1-215	ENST00000561187	GPR75-ASB3	A0A0A6YYF3	556 aa		33.32	■■■□□ 2.92
SNRPA1-215	ENST00000561187	GADL1	Q6ZQY3	521 aa		33.32	■■■□□ 2.92
SNRPA1-215	ENST00000561187	FTSJ3	Q8IY81	847 aa	Known RBP	33.32	■■■□□ 2.92
SNRPA1-215	ENST00000561187	NSUN4	Q96CB9	384 aa	Known RBP	33.32	■■■□□ 2.92
SNRPA1-215	ENST00000561187	ADGRA2	Q96PE1	1338 aa		33.31	■■■□□ 2.92
SNRPA1-215	ENST00000561187	PTPRA	P18433	802 aa		33.31	■■■□□ 2.92
SNRPA1-215	ENST00000561187	SLC4A8	Q2Y0W8	1093 aa		33.31	■■■□□ 2.92
SNRPA1-215	ENST00000561187	ITPRIP	Q8IWB1	547 aa		33.31	■■■□□ 2.92
SNRPA1-215	ENST00000561187	PSMC4	P43686	418 aa		33.3	■■■□□ 2.92
SNRPA1-215	ENST00000561187	GPAT2	Q6NUI2	795 aa		33.3	■■■□□ 2.92
SNRPA1-215	ENST00000561187	NBPF11	Q86T75	865 aa		33.3	■■■□□ 2.92
SNRPA1-215	ENST00000561187	PARK7	Q99497	189 aa	Known RBP	33.3	■■■□□ 2.92
SNRPA1-215	ENST00000561187	LRP2BP	Q9P2M1	347 aa		33.3	■■■□□ 2.92
SNRPA1-215	ENST00000561187	GSTO1	P78417	241 aa		33.29	■■■□□ 2.92
SNRPA1-215	ENST00000561187	TTC39A	Q5SRH9	613 aa		33.29	■■■□□ 2.92
SNRPA1-215	ENST00000561187	TRIM47	Q96LD4	638 aa		33.29	■■■□□ 2.92
SNRPA1-215	ENST00000561187	DBNDD2	Q9BQY9	259 aa		33.29	■■■□□ 2.92
SNRPA1-215	ENST00000561187	TRIM75P	A6NK02	468 aa		33.28	■■■□□ 2.92
SNRPA1-215	ENST00000561187	CXCL11	O14625	94 aa		33.28	■■■□□ 2.92
SNRPA1-215	ENST00000561187	FMNL1	O95466	1100 aa	Predicted RBP	33.28	■■■□□ 2.92
SNRPA1-215	ENST00000561187	POLA2	Q14181	598 aa		33.28	■■■□□ 2.92
SNRPA1-215	ENST00000561187	TNNI3K	Q59H18	835 aa		33.28	■■■□□ 2.92
SNRPA1-215	ENST00000561187	FPGT-TNNI3K	V9GXZ4	949 aa		33.28	■■■□□ 2.92
SNRPA1-215	ENST00000561187		A0A0G2JLL6	359 aa	Predicted RBP	33.27	■■■□□ 2.92
SNRPA1-215	ENST00000561187	RLBP1	P12271	317 aa		33.27	■■■□□ 2.92
SNRPA1-215	ENST00000561187	PRRT2	Q7Z6L0	340 aa	Predicted RBP	33.27	■■■□□ 2.92
SNRPA1-215	ENST00000561187	PTPRF	P10586	1907 aa		33.26	■■■□□ 2.92
SNRPA1-215	ENST00000561187	SURF6	O75683	361 aa	Known RBP	33.26	■■■□□ 2.91
SNRPA1-215	ENST00000561187	LDHC	P07864	332 aa		33.26	■■■□□ 2.91
SNRPA1-215	ENST00000561187	UQCRFS1P1	P0C7P4	283 aa		33.26	■■■□□ 2.91
SNRPA1-215	ENST00000561187	TEX11	Q8IYF3	940 aa		33.26	■■■□□ 2.91
SNRPA1-215	ENST00000561187	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	33.26	■■■□□ 2.91
SNRPA1-215	ENST00000561187	AFG3L2	Q9Y4W6	797 aa		33.26	■■■□□ 2.91
SNRPA1-215	ENST00000561187	PHIP	Q8WWQ0	1821 aa		33.25	■■■□□ 2.91
SNRPA1-215	ENST00000561187	OSBP	P22059	807 aa		33.25	■■■□□ 2.91
SNRPA1-215	ENST00000561187	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	33.25	■■■□□ 2.91
SNRPA1-215	ENST00000561187	MAST2	Q6P0Q8	1798 aa		33.24	■■■□□ 2.91
SNRPA1-215	ENST00000561187	CTNND1	O60716	968 aa	Known RBP	33.24	■■■□□ 2.91
SNRPA1-215	ENST00000561187	ATP8B2	P98198	1209 aa		33.24	■■■□□ 2.91
SNRPA1-215	ENST00000561187	SSH3	Q8TE77	659 aa		33.24	■■■□□ 2.91
SNRPA1-215	ENST00000561187	OSBPL5	Q9H0X9	879 aa	Predicted RBP	33.24	■■■□□ 2.91
SNRPA1-215	ENST00000561187	SRRD	Q9UH36	339 aa		33.24	■■■□□ 2.91
SNRPA1-215	ENST00000561187	MAP3K10	Q02779	954 aa		33.23	■■■□□ 2.91
SNRPA1-215	ENST00000561187	AATF	Q9NY61	560 aa	Known RBP eCLIP	33.23	■■■□□ 2.91
SNRPA1-215	ENST00000561187	MYPN	Q86TC9	1320 aa		33.23	■■■□□ 2.91
SNRPA1-215	ENST00000561187	DIEXF	Q68CQ4	756 aa	Known RBP	33.22	■■■□□ 2.91
SNRPA1-215	ENST00000561187	FASTKD5	Q7L8L6	764 aa	Known RBP	33.22	■■■□□ 2.91
SNRPA1-215	ENST00000561187	RAET1E	Q8TD07	263 aa		33.22	■■■□□ 2.91
SNRPA1-215	ENST00000561187	TLR7	Q9NYK1	1049 aa	Known RBP	33.22	■■■□□ 2.91
SNRPA1-215	ENST00000561187	GNRH1	P01148	92 aa		33.21	■■■□□ 2.91
SNRPA1-215	ENST00000561187	BCR	P11274	1271 aa		33.21	■■■□□ 2.91
SNRPA1-215	ENST00000561187	MTFR1	Q15390	333 aa		33.21	■■■□□ 2.91
SNRPA1-215	ENST00000561187	CCDC158	Q5M9N0	1113 aa		33.21	■■■□□ 2.91
SNRPA1-215	ENST00000561187	NAA16	Q6N069	864 aa	Predicted RBP	33.21	■■■□□ 2.91
SNRPA1-215	ENST00000561187	NOL10	Q9BSC4	688 aa	Known RBP	33.21	■■■□□ 2.91
SNRPA1-215	ENST00000561187	MYO5A	Q9Y4I1	1855 aa	Known RBP	33.2	■■■□□ 2.91
SNRPA1-215	ENST00000561187	ATAD5	Q96QE3	1844 aa		33.2	■■■□□ 2.91
SNRPA1-215	ENST00000561187	PRMT2	P55345	433 aa		33.19	■■■□□ 2.9
SNRPA1-215	ENST00000561187	PRKCZ	Q05513	592 aa		33.19	■■■□□ 2.9
SNRPA1-215	ENST00000561187	ADGRA1	Q86SQ6	560 aa		33.19	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms