RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 NOC4LQ9BVI4 516 aaKnown RBP15.38■□□□□ 0.05
CSPG4P12-202ENST00000559989 GOLGA8CPA6NN73 597 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 PEX19P40855 299 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 BIRC3Q13489 604 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 CTNND2Q9UQB3 1225 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 STK24Q9Y6E0 443 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 E9PMD0 336 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 MAN1A2O60476 641 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 IL1RL1Q01638 556 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 SPTLC2O15270 562 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 HMGB3O15347 200 aaKnown RBP15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 HSPA8P11142 646 aaKnown RBP15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 MGARPQ8TDB4 240 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 CCDC138Q96M89 665 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 PRDM11Q9NQV5 511 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 TBC1D9Q6ZT07 1266 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 ECHDC1Q9NTX5 307 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 CNNM4Q6P4Q7 775 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 PALM2Q8IXS6 379 aa15.37■□□□□ 0.05
CSPG4P12-202ENST00000559989 SV2BQ7L1I2 683 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 CAPN7Q9Y6W3 813 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 ABTB1Q969K4 478 aaPredicted RBP15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 SCYL1Q96KG9 808 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 GNA11P29992 359 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 LONP1P36776 959 aaKnown RBP15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 SESN3P58005 492 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 CCDC13Q8IYE1 715 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 TMOD4Q9NZQ9 345 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 TMPOP42166 694 aaKnown RBP15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 CFAP221Q4G0U5 840 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 IWS1Q96ST2 819 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 DACT1Q9NYF0 836 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 ESYT2A0FGR8 921 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 RGS16O15492 202 aaPredicted RBP15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 STRN3Q13033 797 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 RSAD2Q8WXG1 361 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 NUCKS1Q9H1E3 243 aaKnown RBP15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 EXOC7Q9UPT5 735 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 CD2APQ9Y5K6 639 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 ERBINQ96RT1 1412 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 NUDCD3Q8IVD9 361 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 CCDC68Q9H2F9 335 aa15.36■□□□□ 0.05
CSPG4P12-202ENST00000559989 CFAP70Q5T0N1 1121 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 IPO11Q9UI26 975 aaKnown RBP15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 KIF21BO75037 1637 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 GNGT2O14610 69 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 PPP1R42Q7Z4L9 355 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 KCNH5Q8NCM2 988 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 ZRANB2O95218 330 aaKnown RBP eCLIP15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 GOLGA8KD6RF30 607 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 EVI5O60447 810 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 POLR3CQ9BUI4 534 aaPredicted RBP15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 ZBTB21Q9ULJ3 1066 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 SATB2Q9UPW6 733 aa15.35■□□□□ 0.05
CSPG4P12-202ENST00000559989 CCDC105Q8IYK2 499 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 CARD10Q9BWT7 1032 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 RAD50Q92878 1312 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 CTAGE3PQ8IX95 158 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 USP6NLQ92738 828 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 SECISBP2LQ93073 1101 aaKnown RBP15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 ABCC11Q96J66 1382 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 S100BP04271 92 aaPredicted RBP15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 ANGPTL3Q9Y5C1 460 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 ELP1O95163 1332 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 IGSF3O75054 1194 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 UBE3BQ7Z3V4 1068 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 NBPF3Q9H094 633 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 VPS37BQ9H9H4 285 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 PDXDC1Q6P996 788 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 DCUN1D2Q6PH85 259 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 TXNDC2Q86VQ3 553 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 CFAP61Q8NHU2 1237 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 HAUS1Q96CS2 278 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 JPH4Q96JJ6 628 aa15.34■□□□□ 0.05
CSPG4P12-202ENST00000559989 RNASE9P60153 205 aaKnown RBP15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 RAD51AP2Q09MP3 1159 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 NONOQ15233 471 aaKnown RBP eCLIP15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 Q6ZUG5 572 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 IQUBQ8NA54 791 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 TTLL3Q9Y4R7 772 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 PDE6AP16499 860 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 GARSP41250 739 aaKnown RBP15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 BRAPQ7Z569 592 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 GRK7Q8WTQ7 553 aa15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 ZNF277Q9NRM2 450 aaPredicted RBP15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.33■□□□□ 0.05
CSPG4P12-202ENST00000559989 STX17P56962 302 aa15.33■□□□□ 0.04
CSPG4P12-202ENST00000559989 SLFN5Q08AF3 891 aa15.33■□□□□ 0.04
CSPG4P12-202ENST00000559989 SLC4A4Q9Y6R1 1079 aa15.33■□□□□ 0.04
CSPG4P12-202ENST00000559989 BCRP11274 1271 aa15.33■□□□□ 0.04
CSPG4P12-202ENST00000559989 TMX3Q96JJ7 454 aa15.33■□□□□ 0.04
CSPG4P12-202ENST00000559989 TRIM31Q9BZY9 425 aa15.33■□□□□ 0.04
CSPG4P12-202ENST00000559989 TRAF5O00463 557 aa15.32■□□□□ 0.04
CSPG4P12-202ENST00000559989 KCNA4P22459 653 aa15.32■□□□□ 0.04
CSPG4P12-202ENST00000559989 OAS2P29728 719 aaKnown RBP15.32■□□□□ 0.04
CSPG4P12-202ENST00000559989 SLC9C1Q4G0N8 1177 aa15.32■□□□□ 0.04
CSPG4P12-202ENST00000559989 TYW1Q9NV66 732 aaKnown RBP15.32■□□□□ 0.04
CSPG4P12-202ENST00000559989 SUFUQ9UMX1 484 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms