RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 BSNDQ8WZ55 320 aa8.72□□□□□ -1.01
LRRC28-209ENST00000558861 BTBD6Q96KE9 485 aa8.72□□□□□ -1.01
LRRC28-209ENST00000558861 ZNF587Q96SQ5 575 aaPredicted RBP8.72□□□□□ -1.01
LRRC28-209ENST00000558861 PCGF6Q9BYE7 350 aa8.72□□□□□ -1.01
LRRC28-209ENST00000558861 ZNF576Q9H609 170 aa8.72□□□□□ -1.01
LRRC28-209ENST00000558861 SH2B1Q9NRF2 756 aaPredicted RBP8.72□□□□□ -1.01
LRRC28-209ENST00000558861 SLC52A1Q9NWF4 448 aa8.72□□□□□ -1.01
LRRC28-209ENST00000558861 SOX13Q9UN79 622 aa8.72□□□□□ -1.01
LRRC28-209ENST00000558861 DHX57Q6P158 1386 aaKnown RBP8.72□□□□□ -1.01
LRRC28-209ENST00000558861 ARHGAP23Q9P227 1491 aa8.71□□□□□ -1.01
LRRC28-209ENST00000558861 XRCC5P13010 732 aaKnown RBP8.71□□□□□ -1.02
LRRC28-209ENST00000558861 AMPD1P23109 780 aa8.71□□□□□ -1.02
LRRC28-209ENST00000558861 AFF1P51825 1210 aaKnown RBP8.71□□□□□ -1.02
LRRC28-209ENST00000558861 TAF1CQ15572 869 aaPredicted RBP8.71□□□□□ -1.02
LRRC28-209ENST00000558861 KANK3Q6NY19 840 aa8.71□□□□□ -1.02
LRRC28-209ENST00000558861 TTC9Q92623 222 aa8.71□□□□□ -1.02
LRRC28-209ENST00000558861 USP31Q70CQ4 1352 aa8.71□□□□□ -1.02
LRRC28-209ENST00000558861 EPHA1P21709 976 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 ZNF76P36508 570 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 PTPN12Q05209 780 aaKnown RBP8.7□□□□□ -1.02
LRRC28-209ENST00000558861 FAAP100Q0VG06 881 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 VN1R5Q7Z5H4 357 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 ADAM19Q9H013 955 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 LRRC4BQ9NT99 713 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 PPM1HQ9ULR3 514 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 SPHKAPQ2M3C7 1700 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 SPATA31E1Q6ZUB1 1445 aa8.7□□□□□ -1.02
LRRC28-209ENST00000558861 CFAP65Q6ZU64 1925 aaKnown RBP8.7□□□□□ -1.02
LRRC28-209ENST00000558861 CLTCL1P53675 1640 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 KDM5AP29375 1690 aaKnown RBP8.69□□□□□ -1.02
LRRC28-209ENST00000558861 LILRB5O75023 590 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 CDC27P30260 824 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 ST13P50502 369 aaKnown RBP8.69□□□□□ -1.02
LRRC28-209ENST00000558861 HSPA2P54652 639 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 ZNF385CQ66K41 422 aaPredicted RBP8.69□□□□□ -1.02
LRRC28-209ENST00000558861 TPTE2Q6XPS3 522 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 METTL16Q86W50 562 aaKnown RBP8.69□□□□□ -1.02
LRRC28-209ENST00000558861 ZFYVE9O95405 1425 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 ADGRB3O60242 1522 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 SLIT1O75093 1534 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 TMEM131LA2VDJ0 1609 aa8.69□□□□□ -1.02
LRRC28-209ENST00000558861 UBR1Q8IWV7 1749 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 CDC25BP30305 580 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 BAG6P46379 1132 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 MAP3K10Q02779 954 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 TXNDC11Q6PKC3 985 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 SVOPQ8N4V2 548 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 IL22RA1Q8N6P7 574 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 CLEC4MQ9H2X3 399 aaPredicted RBP8.68□□□□□ -1.02
LRRC28-209ENST00000558861 METTL5Q9NRN9 209 aaKnown RBP8.68□□□□□ -1.02
LRRC28-209ENST00000558861 TMEM2Q9UHN6 1383 aa8.68□□□□□ -1.02
LRRC28-209ENST00000558861 CELA3AP09093 270 aa8.67□□□□□ -1.02
LRRC28-209ENST00000558861 HOXB4P17483 251 aaPredicted RBP8.67□□□□□ -1.02
LRRC28-209ENST00000558861 PCDH1Q08174 1060 aa8.67□□□□□ -1.02
LRRC28-209ENST00000558861 CCDC85BQ15834 202 aaPredicted RBP8.67□□□□□ -1.02
LRRC28-209ENST00000558861 RNF34Q969K3 372 aa8.67□□□□□ -1.02
LRRC28-209ENST00000558861 NEURL4Q96JN8 1562 aa8.67□□□□□ -1.02
LRRC28-209ENST00000558861 TRIM56Q9BRZ2 755 aaKnown RBP8.67□□□□□ -1.02
LRRC28-209ENST00000558861 SEC31BQ9NQW1 1179 aa8.67□□□□□ -1.02
LRRC28-209ENST00000558861 GPN3Q9UHW5 284 aaPredicted RBP8.67□□□□□ -1.02
LRRC28-209ENST00000558861 MED14O60244 1454 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 FAM177BA6PVY3 158 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 LTKP29376 864 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 DGKGP49619 791 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 ZNF157P51786 506 aaPredicted RBP8.66□□□□□ -1.02
LRRC28-209ENST00000558861 ZNF423Q2M1K9 1284 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 RPS26P11Q5JNZ5 115 aaPredicted RBP8.66□□□□□ -1.02
LRRC28-209ENST00000558861 NT5DC4Q86YG4 428 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 ANKRD24Q8TF21 1146 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 STRCQ7RTU9 1775 aa8.66□□□□□ -1.02
LRRC28-209ENST00000558861 CCDC144AA2RUR9 1427 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 H3BRJ5 948 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 ENC1O14682 589 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 ESRRAP11474 423 aaPredicted RBP8.65□□□□□ -1.02
LRRC28-209ENST00000558861 COL9A3Q14050 684 aaPredicted RBP8.65□□□□□ -1.02
LRRC28-209ENST00000558861 HGSNATQ68CP4 663 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 HS2ST1Q7LGA3 356 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 WFDC8Q8IUA0 241 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 THEMISQ8N1K5 641 aaPredicted RBP8.65□□□□□ -1.02
LRRC28-209ENST00000558861 RRAGCQ9HB90 399 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 ZFYVE1Q9HBF4 777 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 PRDM6Q9NQX0 595 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 GGT7Q9UJ14 662 aa8.65□□□□□ -1.02
LRRC28-209ENST00000558861 F6X3S4 739 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 LINC01387J3KSC0 135 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 B3GALT4O96024 378 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 NID1P14543 1247 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 CABP4P57796 275 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 IKBKEQ14164 716 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 MAP3K11Q16584 847 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 NEDD1Q8NHV4 660 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 NECAB3Q96P71 396 aaPredicted RBP8.64□□□□□ -1.03
LRRC28-209ENST00000558861 NOC4LQ9BVI4 516 aaKnown RBP8.64□□□□□ -1.03
LRRC28-209ENST00000558861 CEP44Q9C0F1 390 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 COPRSQ9NQ92 184 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 PPME1Q9Y570 386 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 PCDHGB7Q9Y5F8 929 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 NEXMIFQ5QGS0 1516 aa8.64□□□□□ -1.03
LRRC28-209ENST00000558861 SOX1O00570 391 aaPredicted RBP8.63□□□□□ -1.03
LRRC28-209ENST00000558861 WIPF1O43516 503 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms