RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 MVPQ14764 893 aaKnown RBP13.49□□□□□ -0.25
SYNE2-227ENST00000557307 ITPRIPQ8IWB1 547 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.49□□□□□ -0.25
SYNE2-227ENST00000557307 SPATA5Q8NB90 893 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 IDI2Q9BXS1 227 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 SNRKQ9NRH2 765 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 HDAC5Q9UQL6 1122 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 AKAP2Q9Y2D5 859 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 DDX60LQ5H9U9 1706 aaKnown RBP13.49□□□□□ -0.25
SYNE2-227ENST00000557307 PHF20L1A8MW92 1017 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 ZBTB7BO15156 539 aaPredicted RBP13.48□□□□□ -0.25
SYNE2-227ENST00000557307 ATP8B2P98198 1209 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 SP3Q02447 781 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 PKN2Q16513 984 aaKnown RBP13.48□□□□□ -0.25
SYNE2-227ENST00000557307 TNNI3KQ59H18 835 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 DCAF15Q66K64 600 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 ADGRA1Q86SQ6 560 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 NSUN4Q96CB9 384 aaKnown RBP13.48□□□□□ -0.25
SYNE2-227ENST00000557307 FPGT-TNNI3KV9GXZ4 949 aa13.48□□□□□ -0.25
SYNE2-227ENST00000557307 ADGRA2Q96PE1 1338 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 NAV1Q8NEY1 1877 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 POTEFA5A3E0 1075 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 G3BP1Q13283 466 aaKnown RBP eCLIP13.47□□□□□ -0.25
SYNE2-227ENST00000557307 RRP1BQ14684 758 aaKnown RBP13.47□□□□□ -0.25
SYNE2-227ENST00000557307 NOL9Q5SY16 702 aaKnown RBP13.47□□□□□ -0.25
SYNE2-227ENST00000557307 ERICH6Q7L0X2 663 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 ZGPATQ8N5A5 531 aaKnown RBP13.47□□□□□ -0.25
SYNE2-227ENST00000557307 ERO1AQ96HE7 468 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 PTPN22Q9Y2R2 807 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 NDUFB9Q9Y6M9 179 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 PDE4DIPQ5VU43 2346 aa13.47□□□□□ -0.25
SYNE2-227ENST00000557307 GPR75-ASB3A0A0A6YYF3 556 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 ENTPD3O75355 529 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 CETPP11597 493 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 PPATQ06203 517 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 SNAPC2Q13487 334 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 OTUD7BQ6GQQ9 843 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 CEP85Q6P2H3 762 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 FTSJ3Q8IY81 847 aaKnown RBP13.46□□□□□ -0.25
SYNE2-227ENST00000557307 FAM163AQ96GL9 167 aaPredicted RBP13.46□□□□□ -0.25
SYNE2-227ENST00000557307 EFCC1Q9HA90 598 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 DBNLQ9UJU6 430 aaKnown RBP13.46□□□□□ -0.25
SYNE2-227ENST00000557307 KCNH4Q9UQ05 1017 aa13.46□□□□□ -0.25
SYNE2-227ENST00000557307 SURF6O75683 361 aaKnown RBP13.45□□□□□ -0.26
SYNE2-227ENST00000557307 CYP2E1P05181 493 aaPredicted RBP13.45□□□□□ -0.26
SYNE2-227ENST00000557307 GORABQ5T7V8 394 aa13.45□□□□□ -0.26
SYNE2-227ENST00000557307 GPAT2Q6NUI2 795 aa13.45□□□□□ -0.26
SYNE2-227ENST00000557307 SH3RF3Q8TEJ3 882 aaPredicted RBP13.45□□□□□ -0.26
SYNE2-227ENST00000557307 CCDC8Q9H0W5 538 aaPredicted RBP13.45□□□□□ -0.26
SYNE2-227ENST00000557307 ZFYVE28Q9HCC9 887 aa13.45□□□□□ -0.26
SYNE2-227ENST00000557307 PIH1D3Q9NQM4 214 aaKnown RBP13.45□□□□□ -0.26
SYNE2-227ENST00000557307 RAI14Q9P0K7 980 aa13.45□□□□□ -0.26
SYNE2-227ENST00000557307 CPA4Q9UI42 421 aa13.45□□□□□ -0.26
SYNE2-227ENST00000557307 PTCH2Q9Y6C5 1203 aa13.45□□□□□ -0.26
SYNE2-227ENST00000557307 TLR2O60603 784 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 ZAP70P43403 619 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 MAP3K10Q02779 954 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 SHROOM1Q2M3G4 852 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-227ENST00000557307 SPTY2D1Q68D10 685 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-227ENST00000557307 ZSCAN29Q8IWY8 852 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-227ENST00000557307 SCYL3Q8IZE3 742 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 EAF2Q96CJ1 260 aaPredicted RBP13.44□□□□□ -0.26
SYNE2-227ENST00000557307 HOOK2Q96ED9 719 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 GPR108Q9NPR9 543 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 EXOC6BQ9Y2D4 811 aa13.44□□□□□ -0.26
SYNE2-227ENST00000557307 NOP58Q9Y2X3 529 aaKnown RBP13.44□□□□□ -0.26
SYNE2-227ENST00000557307 PLXNB2O15031 1838 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 COL2A1P02458 1487 aaPredicted RBP13.43□□□□□ -0.26
SYNE2-227ENST00000557307 MYH7P12883 1935 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 PDHXO00330 501 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 CYP2C8P10632 490 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 PTPRAP18433 802 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 OS9Q13438 667 aaPredicted RBP13.43□□□□□ -0.26
SYNE2-227ENST00000557307 TTC39AQ5SRH9 613 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 C17orf99Q6UX52 265 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 DOCK3Q8IZD9 2030 aa13.43□□□□□ -0.26
SYNE2-227ENST00000557307 AATFQ9NY61 560 aaKnown RBP eCLIP13.43□□□□□ -0.26
SYNE2-227ENST00000557307 UQCRFS1P1P0C7P4 283 aa13.42□□□□□ -0.26
SYNE2-227ENST00000557307 DYNLL1P63167 89 aaKnown RBP13.42□□□□□ -0.26
SYNE2-227ENST00000557307 JAG1P78504 1218 aa13.42□□□□□ -0.26
SYNE2-227ENST00000557307 LACTBP83111 547 aaPredicted RBP13.42□□□□□ -0.26
SYNE2-227ENST00000557307 ANKRD23Q86SG2 305 aa13.42□□□□□ -0.26
SYNE2-227ENST00000557307 OSBPL5Q9H0X9 879 aaPredicted RBP13.42□□□□□ -0.26
SYNE2-227ENST00000557307 DNAJC18Q9H819 358 aa13.42□□□□□ -0.26
SYNE2-227ENST00000557307 KIAA0100Q14667 2235 aaKnown RBP13.41□□□□□ -0.26
SYNE2-227ENST00000557307 A0A0G2JLL6 359 aaPredicted RBP13.41□□□□□ -0.26
SYNE2-227ENST00000557307 MYCP01106 439 aaPredicted RBP13.41□□□□□ -0.26
SYNE2-227ENST00000557307 SLC4A8Q2Y0W8 1093 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 PRRT2Q7Z6L0 340 aaPredicted RBP13.41□□□□□ -0.26
SYNE2-227ENST00000557307 SLF2Q8IX21 1173 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 SIRT2Q8IXJ6 389 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 TEX11Q8IYF3 940 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 SH3TC2Q8TF17 1288 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 ARMC5Q96C12 935 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 TRIM47Q96LD4 638 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 ANTXR1Q9H6X2 564 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 ZCCHC17Q9NP64 241 aaKnown RBP13.41□□□□□ -0.26
SYNE2-227ENST00000557307 LRP2BPQ9P2M1 347 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 AFG3L2Q9Y4W6 797 aa13.41□□□□□ -0.26
SYNE2-227ENST00000557307 ZHX2Q9Y6X8 837 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms