RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 A0A0A0MRY4 1105 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 SCO2A0A1W2PP80 73 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 SSFA2P28290 1259 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 TBC1D8BQ0IIM8 1120 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 ADGRE1Q14246 886 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 RTN1Q16799 776 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 AMIGO3Q86WK7 504 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 SMARCC1Q92922 1105 aaPredicted RBP6.76□□□□□ -1.33
SCFD1-223ENST00000557076 PNMA5Q96PV4 448 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 KRTAP4-8Q9BYQ9 185 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 USP31Q70CQ4 1352 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 QSER1Q2KHR3 1735 aa6.76□□□□□ -1.33
SCFD1-223ENST00000557076 ARHGEF28Q8N1W1 1705 aaKnown RBP6.76□□□□□ -1.33
SCFD1-223ENST00000557076 AKAP12Q02952 1782 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 TOPAZ1Q8N9V7 1692 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 TGFBR3LH3BV60 316 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 H2AFB1P0C5Y9 115 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 H2AFB2P0C5Z0 115 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 VEGFAP15692 232 aaPredicted RBP6.75□□□□□ -1.33
SCFD1-223ENST00000557076 EPB42P16452 691 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 KCNA3P22001 575 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 RGS19P49795 217 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 MBTPS1Q14703 1052 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 PCSK7Q16549 785 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 NLGN1Q8N2Q7 840 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.75□□□□□ -1.33
SCFD1-223ENST00000557076 BTAF1O14981 1849 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 C10orf71Q711Q0 1435 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 CGNL1Q0VF96 1302 aa6.75□□□□□ -1.33
SCFD1-223ENST00000557076 PLEKHG2Q9H7P9 1386 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 MMP10P09238 476 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 DPEP1P16444 411 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 CCINQ13939 588 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 SMIM5Q71RC9 77 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 TXNRD3Q86VQ6 643 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 LENG1Q96BZ8 264 aaPredicted RBP6.74□□□□□ -1.33
SCFD1-223ENST00000557076 GSX2Q9BZM3 304 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 IGFLR1Q9H665 355 aa6.74□□□□□ -1.33
SCFD1-223ENST00000557076 DNAJB12Q9NXW2 375 aaKnown RBP6.74□□□□□ -1.33
SCFD1-223ENST00000557076 MAFBQ9Y5Q3 323 aaPredicted RBP6.74□□□□□ -1.33
SCFD1-223ENST00000557076 FOXN1O15353 648 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 SELPP16109 830 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 CTCFP49711 727 aaPredicted RBP6.73□□□□□ -1.33
SCFD1-223ENST00000557076 TMF1P82094 1093 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 PRSS36Q5K4E3 855 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 PSAPL1Q6NUJ1 521 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.73□□□□□ -1.332e-7■■■■□ 19.9
SCFD1-223ENST00000557076 NUDT8Q8WV74 236 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 GLMNQ92990 594 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 PSMG3-AS1Q96PY0 264 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 PIM2Q9P1W9 311 aa6.73□□□□□ -1.33
SCFD1-223ENST00000557076 TFIP11Q9UBB9 837 aaKnown RBP6.73□□□□□ -1.33
SCFD1-223ENST00000557076 KTN1Q86UP2 1357 aaKnown RBP6.72□□□□□ -1.33
SCFD1-223ENST00000557076 NFAT5O94916 1531 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 GLTPD2A6NH11 291 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 RGS9O75916 674 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-223ENST00000557076 NFKB1P19838 968 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 IGFBP4P22692 258 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 AFF1P51825 1210 aaKnown RBP6.72□□□□□ -1.33
SCFD1-223ENST00000557076 MLLT1Q03111 559 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-223ENST00000557076 DALRD3Q5D0E6 543 aaKnown RBP6.72□□□□□ -1.33
SCFD1-223ENST00000557076 ARTNQ5T4W7 220 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 MPRIPQ6WCQ1 1025 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 NME9Q86XW9 330 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 LTV1Q96GA3 475 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-223ENST00000557076 HINFPQ9BQA5 517 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 ZFP64Q9NPA5 681 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 C11orf16Q9NQ32 467 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 CCDC87Q9NVE4 849 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 RNF181Q9P0P0 153 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 NSD3Q9BZ95 1437 aa6.72□□□□□ -1.33
SCFD1-223ENST00000557076 PALLDQ8WX93 1383 aa6.71□□□□□ -1.33
SCFD1-223ENST00000557076 WDR90Q96KV7 1748 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 LOC102724428A0A0B4J2F2 783 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 SIK1P57059 783 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 FOXD4L6Q3SYB3 417 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-223ENST00000557076 FOXD4L3Q6VB84 417 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-223ENST00000557076 FMR1NBQ8N0W7 255 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-223ENST00000557076 DTWD1Q8N5C7 304 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 PIGBQ92521 554 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 ABHD8Q96I13 439 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 DMGDHQ9UI17 866 aaKnown RBP6.71□□□□□ -1.34
SCFD1-223ENST00000557076 NAGPAQ9UK23 515 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 PXDNLA1KZ92 1463 aa6.71□□□□□ -1.34
SCFD1-223ENST00000557076 CICQ96RK0 1608 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-223ENST00000557076 FAM196BA6NMK8 535 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 MAP3K6O95382 1288 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 HOXC9P31274 260 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 PTK7Q13308 1070 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 NBPF6Q5VWK0 638 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 FAM35AQ86V20 835 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 LINC00116Q8NCU8 138 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 RAPGEF4Q8WZA2 1011 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 NBPF4Q96M43 638 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 FRRS1LQ9P0K9 344 aa6.7□□□□□ -1.34
SCFD1-223ENST00000557076 WNK3Q9BYP7 1800 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 PIK3C2AO00443 1686 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 IDH3AP50213 366 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 DPYDQ12882 1025 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 SHISA2Q6UWI4 295 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms