RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 GPR101Q96P66 508 aaPredicted RBP11.81□□□□□ -0.52
TMEM260-211ENST00000556648 KRT23Q9C075 422 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 CNNM2Q9H8M5 875 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 RTEL1Q9NZ71 1219 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 PCDHA7Q9UN72 937 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 UBR3Q6ZT12 1888 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 CCDC69A6NI79 296 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 PRDX5P30044 214 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 LIFRP42702 1097 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 ME1P48163 572 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 MECOMQ03112 1051 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 SNW1Q13573 536 aaKnown RBP11.8□□□□□ -0.52
TMEM260-211ENST00000556648 ANO6Q4KMQ2 910 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 TRAPPC3LQ5T215 181 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 MYSM1Q5VVJ2 828 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 KRT40Q6A162 431 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 LUZP1Q86V48 1076 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 FSIP1Q8NA03 581 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 SLC12A7Q9Y666 1083 aa11.8□□□□□ -0.52
TMEM260-211ENST00000556648 NPHP1O15259 732 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 HIBADHP31937 336 aaKnown RBP11.79□□□□□ -0.52
TMEM260-211ENST00000556648 GUCY1A2P33402 732 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 WTAPQ15007 396 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 HS1BP3Q53T59 392 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 CMTR1Q8N1G2 835 aaKnown RBP11.79□□□□□ -0.52
TMEM260-211ENST00000556648 LINC00301Q8NCQ3 95 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 ENGASEQ8NFI3 743 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 NSUN4Q96CB9 384 aaKnown RBP11.79□□□□□ -0.52
TMEM260-211ENST00000556648 SLC26A6Q9BXS9 759 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 CCDC39Q9UFE4 941 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 LAMB1P07942 1786 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 NID2Q14112 1375 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 PLCB2Q00722 1185 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 ATL3Q6DD88 541 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 ERCC4Q92889 916 aaPredicted RBP11.79□□□□□ -0.52
TMEM260-211ENST00000556648 ANKRD2Q9GZV1 360 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 NOL7Q9UMY1 257 aaKnown RBP11.79□□□□□ -0.52
TMEM260-211ENST00000556648 MYH2Q9UKX2 1941 aa11.79□□□□□ -0.52
TMEM260-211ENST00000556648 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.78□□□□□ -0.52
TMEM260-211ENST00000556648 ONECUT3O60422 494 aaPredicted RBP11.78□□□□□ -0.52
TMEM260-211ENST00000556648 PRDM1O75626 825 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 CDKL5O76039 1030 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 PTMAP06454 111 aaKnown RBP11.78□□□□□ -0.52
TMEM260-211ENST00000556648 CYP2D6P10635 497 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 IARSP41252 1262 aaKnown RBP11.78□□□□□ -0.52
TMEM260-211ENST00000556648 STK38Q15208 465 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 FAM200AQ8TCP9 573 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 CBX8Q9HC52 389 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 AATFQ9NY61 560 aaKnown RBP eCLIP11.78□□□□□ -0.52
TMEM260-211ENST00000556648 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.78□□□□□ -0.52
TMEM260-211ENST00000556648 BRWD3Q6RI45 1802 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 KIAA1551Q9HCM1 1747 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 MROH7-TTC4A0A0A0MT08 1334 aa11.78□□□□□ -0.52
TMEM260-211ENST00000556648 A0A1B0GVL5 298 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 SEMA3EO15041 775 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 MSNP26038 577 aaKnown RBP11.77□□□□□ -0.52
TMEM260-211ENST00000556648 SEC23AQ15436 765 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 RTN1Q16799 776 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 PRR5LQ6MZQ0 368 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 CTR9Q6PD62 1173 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 CCDC73Q6ZRK6 1079 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 C11orf57Q6ZUT1 292 aaPredicted RBP11.77□□□□□ -0.52
TMEM260-211ENST00000556648 BRAPQ7Z569 592 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 CCDC82Q8N4S0 544 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 CNBD1Q8NA66 436 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 CERKQ8TCT0 537 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 ZNF830Q96NB3 372 aaPredicted RBP11.77□□□□□ -0.52
TMEM260-211ENST00000556648 DNAJC25Q9H1X3 360 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 ANAPC4Q9UJX5 808 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 TRPC5Q9UL62 973 aaPredicted RBP11.77□□□□□ -0.52
TMEM260-211ENST00000556648 ZKSCAN5Q9Y2L8 839 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.77□□□□□ -0.52
TMEM260-211ENST00000556648 TNKSO95271 1327 aa11.77□□□□□ -0.52
TMEM260-211ENST00000556648 DLEC1Q9Y238 1755 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 FMNL1O95466 1100 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-211ENST00000556648 NDUFA8P51970 172 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 SSRP1Q08945 709 aaKnown RBP11.77□□□□□ -0.53
TMEM260-211ENST00000556648 GRAPQ13588 217 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 GRIK5Q16478 980 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 ANO1Q5XXA6 986 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 NBPF11Q86T75 865 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 ZNF654Q8IZM8 581 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 GRAPLQ8TC17 118 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-211ENST00000556648 NUP133Q8WUM0 1156 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 BRIP1Q9BX63 1249 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 BCL11BQ9C0K0 894 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-211ENST00000556648 RNF41Q9H4P4 317 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-211ENST00000556648 POLR3EQ9NVU0 708 aa11.77□□□□□ -0.53
TMEM260-211ENST00000556648 SPTLC2O15270 562 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 WDHD1O75717 1129 aaPredicted RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 YEATS4O95619 227 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 GYS1P13807 737 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 IFNAR1P17181 557 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 FAM160A1Q05DH4 1040 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 SLC4A8Q2Y0W8 1093 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 CPLX2Q6PUV4 134 aaKnown RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 SASS6Q6UVJ0 657 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 FMR1NBQ8N0W7 255 aaPredicted RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 KLHL34Q8N239 644 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 MRPS27Q92552 414 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms