RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MISP3Q96FF7 219 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 DCTN4Q9UJW0 460 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 PCOLCE2Q9UKZ9 415 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 AKAP2Q9Y2D5 859 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 PAPLNO95428 1278 aa7.4□□□□□ -1.22
SCFD1-219ENST00000556413 ARNTP27540 789 aa7.4□□□□□ -1.22
SCFD1-219ENST00000556413 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.4□□□□□ -1.22
SCFD1-219ENST00000556413 ZC3H12AQ5D1E8 599 aaKnown RBP7.4□□□□□ -1.22
SCFD1-219ENST00000556413 DUSP23Q9BVJ7 150 aa7.4□□□□□ -1.22
SCFD1-219ENST00000556413 BIN2Q9UBW5 565 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-219ENST00000556413 PNMA6FA0A0J9YX94 578 aa7.39□□□□□ -1.23
SCFD1-219ENST00000556413 CD8BP10966 210 aa7.39□□□□□ -1.23
SCFD1-219ENST00000556413 MAP1SQ66K74 1059 aaPredicted RBP7.39□□□□□ -1.23
SCFD1-219ENST00000556413 ISL2Q96A47 359 aa7.39□□□□□ -1.23
SCFD1-219ENST00000556413 SUPT5HO00267 1087 aaKnown RBP7.38□□□□□ -1.23
SCFD1-219ENST00000556413 NME2P22392 152 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 OXCT1P55809 520 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 ERVK-24P63145 666 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 PLCB3Q01970 1234 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 PRKCQQ04759 706 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 ZNF252P-AS1Q0IIN9 211 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 FZD5Q13467 585 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 ENOX2Q16206 610 aaKnown RBP7.38□□□□□ -1.23
SCFD1-219ENST00000556413 MPRIPQ6WCQ1 1025 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 POU5F2Q8N7G0 328 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 RNF214Q8ND24 703 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 GPBAR1Q8TDU6 330 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 MKNK2Q9HBH9 465 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 VAV3Q9UKW4 847 aa7.38□□□□□ -1.23
SCFD1-219ENST00000556413 GNEQ9Y223 722 aaKnown RBP7.38□□□□□ -1.23
SCFD1-219ENST00000556413 TREHO43280 583 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 FUT4P22083 530 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 CD96P40200 585 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.37□□□□□ -1.23
SCFD1-219ENST00000556413 C3orf58Q8NDZ4 430 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 NECAB3Q96P71 396 aaPredicted RBP7.37□□□□□ -1.23
SCFD1-219ENST00000556413 EMILIN2Q9BXX0 1053 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 SSU72Q9NP77 194 aaKnown RBP7.37□□□□□ -1.23
SCFD1-219ENST00000556413 CACNA2D2Q9NY47 1150 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 PLAGL2Q9UPG8 496 aa7.37□□□□□ -1.23
SCFD1-219ENST00000556413 CEACAM5P06731 702 aa7.36□□□□□ -1.23
SCFD1-219ENST00000556413 IFI16Q16666 785 aaKnown RBP7.36□□□□□ -1.23
SCFD1-219ENST00000556413 TOP6BLQ8N6T0 577 aa7.36□□□□□ -1.23
SCFD1-219ENST00000556413 CBX8Q9HC52 389 aa7.36□□□□□ -1.23
SCFD1-219ENST00000556413 MBNL3Q9NUK0 354 aaKnown RBP7.36□□□□□ -1.23
SCFD1-219ENST00000556413 ADAMTS6Q9UKP5 1117 aa7.36□□□□□ -1.23
SCFD1-219ENST00000556413 CARMIL2Q6F5E8 1435 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 BIN1O00499 593 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 C8AP07357 584 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 RNASE1P07998 156 aaKnown RBP7.35□□□□□ -1.23
SCFD1-219ENST00000556413 MAPK1P28482 360 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 AOC3Q16853 763 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 GRIN3AQ8TCU5 1115 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 ACSBG1Q96GR2 724 aa7.35□□□□□ -1.23
SCFD1-219ENST00000556413 BMP6P22004 513 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 NTF4P34130 210 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 TPTE2Q6XPS3 522 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 ARHGAP27Q6ZUM4 889 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 FAM214BQ7L5A3 538 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 HRASLS5Q96KN8 279 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 HEXIM2Q96MH2 286 aaKnown RBP7.34□□□□□ -1.23
SCFD1-219ENST00000556413 RC3H2Q9HBD1 1191 aaKnown RBP7.34□□□□□ -1.23
SCFD1-219ENST00000556413 CSADQ9Y600 493 aa7.34□□□□□ -1.23
SCFD1-219ENST00000556413 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.34□□□□□ -1.23
SCFD1-219ENST00000556413 TMEM265A0A087WTH1 108 aa7.33□□□□□ -1.24
SCFD1-219ENST00000556413 ENC1O14682 589 aa7.33□□□□□ -1.24
SCFD1-219ENST00000556413 PAGE1O75459 146 aa7.33□□□□□ -1.24
SCFD1-219ENST00000556413 BRD1O95696 1058 aa7.33□□□□□ -1.24
SCFD1-219ENST00000556413 JAG1P78504 1218 aa7.33□□□□□ -1.24
SCFD1-219ENST00000556413 PPM1JQ5JR12 505 aa7.33□□□□□ -1.24
SCFD1-219ENST00000556413 ATG4DQ86TL0 474 aaPredicted RBP7.33□□□□□ -1.24
SCFD1-219ENST00000556413 ITIH2P19823 946 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 GSTT1P30711 240 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 RING1Q06587 406 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 UBE3DQ7Z6J8 389 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 PI4K2BQ8TCG2 481 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 OSBPL7Q9BZF2 842 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 TNKS2Q9H2K2 1166 aa7.32□□□□□ -1.24
SCFD1-219ENST00000556413 DCDC2CA8MYV0 355 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 FBXO24O75426 580 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 TRIM37O94972 964 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 MAPK8P45983 427 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 C12orf40Q86WS4 652 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 LRRN4CLQ8ND94 238 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 FBF1Q8TES7 1133 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 SETDB2Q96T68 719 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 CEP44Q9C0F1 390 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 SRCIN1Q9C0H9 1055 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 PRDM10Q9NQV6 1147 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 SAMM50Q9Y512 469 aa7.31□□□□□ -1.24
SCFD1-219ENST00000556413 RASIP1Q5U651 963 aa7.3□□□□□ -1.24
SCFD1-219ENST00000556413 FAM168AQ92567 244 aa7.3□□□□□ -1.24
SCFD1-219ENST00000556413 PPM1HQ9ULR3 514 aa7.3□□□□□ -1.24
SCFD1-219ENST00000556413 SNX11Q9Y5W9 270 aa7.3□□□□□ -1.24
SCFD1-219ENST00000556413 ARID1BQ8NFD5 2236 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-219ENST00000556413 IGF2BP3O00425 579 aaKnown RBP eCLIP7.29□□□□□ -1.24
SCFD1-219ENST00000556413 FANCGO15287 622 aa7.29□□□□□ -1.24
SCFD1-219ENST00000556413 FMR1Q06787 632 aaKnown RBP eCLIP7.29□□□□□ -1.24
SCFD1-219ENST00000556413 ZNF648Q5T619 568 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-219ENST00000556413 ANGEL2Q5VTE6 544 aaKnown RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms