RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 FOXO4P98177 505 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 DEFB123Q8N688 67 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 COL25A1Q9BXS0 654 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-216ENST00000554975 DDX60LQ5H9U9 1706 aaKnown RBP13.54□□□□□ -0.24
SHMT2-216ENST00000554975 ELNP15502 786 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 TNNI2P48788 182 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 UBXN2AP68543 259 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 EPHA10Q5JZY3 1008 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 ANKRD23Q86SG2 305 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 ANKRD44Q8N8A2 993 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 DIS3LQ8TF46 1054 aaKnown RBP13.54□□□□□ -0.24
SHMT2-216ENST00000554975 GDF15Q99988 308 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 CHMP3Q9Y3E7 222 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 EYSQ5T1H1 3165 aa13.54□□□□□ -0.24
SHMT2-216ENST00000554975 SPTBN5Q9NRC6 3674 aaKnown RBP13.53□□□□□ -0.24
SHMT2-216ENST00000554975 PHIPQ8WWQ0 1821 aa13.53□□□□□ -0.24
SHMT2-216ENST00000554975 BCRP11274 1271 aa13.53□□□□□ -0.24
SHMT2-216ENST00000554975 HOXD10P28358 340 aa13.53□□□□□ -0.24
SHMT2-216ENST00000554975 FAM84BQ96KN1 310 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-216ENST00000554975 LNPKQ9C0E8 428 aa13.53□□□□□ -0.24
SHMT2-216ENST00000554975 C9orf78Q9NZ63 289 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-216ENST00000554975 CYP2C8P10632 490 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 PPATQ06203 517 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 IFIT5Q13325 482 aaKnown RBP13.52□□□□□ -0.25
SHMT2-216ENST00000554975 BEND3Q5T5X7 828 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 MIGA2Q7L4E1 593 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 SLAIN1Q8ND83 568 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 DEFB118Q96PH6 123 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 C22orf23Q9BZE7 217 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 SRCIN1Q9C0H9 1055 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 MTMR10Q9NXD2 777 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 ZMYND8Q9ULU4 1186 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-216ENST00000554975 IQSEC3Q9UPP2 1182 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-216ENST00000554975 KCNH4Q9UQ05 1017 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 STXBP5LQ9Y2K9 1186 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 DOCK2Q92608 1830 aa13.52□□□□□ -0.25
SHMT2-216ENST00000554975 LAMA2P24043 3122 aaKnown RBP13.52□□□□□ -0.25
SHMT2-216ENST00000554975 ADCY3O60266 1144 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 CDC45O75419 566 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 INHAP05111 366 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 GNAI3P08754 354 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 HIBADHP31937 336 aaKnown RBP13.51□□□□□ -0.25
SHMT2-216ENST00000554975 BCAMP50895 628 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 ANKRD45Q5TZF3 282 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 GPAT2Q6NUI2 795 aa13.51□□□□□ -0.25
SHMT2-216ENST00000554975 PAWRQ96IZ0 340 aaKnown RBP13.51□□□□□ -0.25
SHMT2-216ENST00000554975 GRM8O00222 908 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 TFRCP02786 760 aaKnown RBP13.5□□□□□ -0.25
SHMT2-216ENST00000554975 BMP8BP34820 402 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 MFAP1P55081 439 aaKnown RBP13.5□□□□□ -0.25
SHMT2-216ENST00000554975 FCGRTP55899 365 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 GPR153Q6NV75 609 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 CASC1Q6TDU7 716 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 LMBR1LQ6UX01 489 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 LDHAL6AQ6ZMR3 332 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 HSCBQ8IWL3 235 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 C7orf61Q8IZ16 206 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 PUS3Q9BZE2 481 aaKnown RBP13.5□□□□□ -0.25
SHMT2-216ENST00000554975 CRISPLD2Q9H0B8 497 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 DCTPP1Q9H773 170 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 PAK6Q9NQU5 681 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-216ENST00000554975 PLXNB2O15031 1838 aa13.5□□□□□ -0.25
SHMT2-216ENST00000554975 RPAP1Q9BWH6 1393 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-216ENST00000554975 ALDH1L1O75891 902 aa13.49□□□□□ -0.25
SHMT2-216ENST00000554975 SYN1P17600 705 aa13.49□□□□□ -0.25
SHMT2-216ENST00000554975 DEKP35659 375 aaKnown RBP13.49□□□□□ -0.25
SHMT2-216ENST00000554975 RBM25P49756 843 aaKnown RBP13.49□□□□□ -0.25
SHMT2-216ENST00000554975 FLT3LGP49771 235 aa13.49□□□□□ -0.25
SHMT2-216ENST00000554975 CHAF1AQ13111 956 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-216ENST00000554975 APOBEC3HQ6NTF7 200 aaKnown RBP13.49□□□□□ -0.25
SHMT2-216ENST00000554975 FAM83AQ86UY5 434 aa13.49□□□□□ -0.25
SHMT2-216ENST00000554975 ZNF341Q9BYN7 854 aa13.49□□□□□ -0.25
SHMT2-216ENST00000554975 CNNM1Q9NRU3 951 aa13.49□□□□□ -0.25
SHMT2-216ENST00000554975 PRUNE2Q8WUY3 3088 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 UBE4AQ14139 1066 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 CEP85Q6P2H3 762 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 ZDHHC15Q96MV8 337 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 PARK7Q99497 189 aaKnown RBP13.48□□□□□ -0.25
SHMT2-216ENST00000554975 C1orf115Q9H7X2 142 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 ZNF112Q9UJU3 913 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 DOCK1Q14185 1865 aa13.48□□□□□ -0.25
SHMT2-216ENST00000554975 MAGEA10P43363 369 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-216ENST00000554975 HDLBPQ00341 1268 aaKnown RBP13.47□□□□□ -0.25
SHMT2-216ENST00000554975 NFKBIBQ15653 356 aa13.47□□□□□ -0.25
SHMT2-216ENST00000554975 LRIT3Q3SXY7 679 aa13.47□□□□□ -0.25
SHMT2-216ENST00000554975 DCAF15Q66K64 600 aa13.47□□□□□ -0.25
SHMT2-216ENST00000554975 FBXO33Q7Z6M2 555 aa13.47□□□□□ -0.25
SHMT2-216ENST00000554975 TEKT1Q969V4 418 aa13.47□□□□□ -0.25
SHMT2-216ENST00000554975 TTC28Q96AY4 2481 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 SEC24BO95487 1268 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 GNAI2P04899 355 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 CCDC57Q2TAC2 916 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 TAF7LQ5H9L4 462 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 FKBP1CQ5VVH2 108 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHMT2-216ENST00000554975 PXYLP1Q8TE99 480 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 SNX21Q969T3 373 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 HDAC5Q9UQL6 1122 aa13.46□□□□□ -0.25
SHMT2-216ENST00000554975 TCP10Q12799 353 aa13.45□□□□□ -0.26
SHMT2-216ENST00000554975 NOL9Q5SY16 702 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms