RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 TESPA1A2RU30 521 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 APBB1O00213 710 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 IGSF3O75054 1194 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 NPM3O75607 178 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 MAP4K4O95819 1239 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 INHBEP58166 350 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 MAP3K10Q02779 954 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 DCAF15Q66K64 600 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 ADGRA1Q86SQ6 560 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 CLASRPQ8N2M8 674 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 ZKSCAN4Q969J2 545 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 OPTNQ96CV9 577 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 MS4A4AQ96JQ5 239 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 WRNIP1Q96S55 665 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 CFHR5Q9BXR6 569 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 ZNF341Q9BYN7 854 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 NDUFB9Q9Y6M9 179 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 PDE4DIPQ5VU43 2346 aa12.57□□□□□ -0.4
CCDC88C-206ENST00000553437 DDTLA6NHG4 134 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 SPDYE5A6NIY4 337 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 IGF2BP3O00425 579 aaKnown RBP eCLIP12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 TBC1D8O95759 1140 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 INPP5BP32019 993 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 PPP4CP60510 307 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 MLLT1Q03111 559 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 NAA16Q6N069 864 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 IFNL1Q8IU54 200 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 PTPN18Q99952 460 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 R3HDMLQ9H3Y0 253 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 ANTXR1Q9H6X2 564 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 CSADQ9Y600 493 aa12.56□□□□□ -0.4
CCDC88C-206ENST00000553437 PHF20L1A8MW92 1017 aa12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 SLURP2P0DP57 97 aa12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 PICALMQ13492 652 aa12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 ERO1BQ86YB8 467 aa12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 SH3RF3Q8TEJ3 882 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 DCTPP1Q9H773 170 aa12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 PCDHB15Q9Y5E8 787 aa12.55□□□□□ -0.4
CCDC88C-206ENST00000553437 ALDH1A1P00352 501 aa12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 IFIT2P09913 472 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 RGS19P49795 217 aa12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 NOM1Q5C9Z4 860 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 BRI3BPQ8WY22 251 aa12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 OTUD5Q96G74 571 aa12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 AATFQ9NY61 560 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 MYH13Q9UKX3 1938 aa12.54□□□□□ -0.4
CCDC88C-206ENST00000553437 HAX1O00165 279 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 IRF6O14896 467 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 IDH1O75874 414 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 BAG3O95817 575 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 CYP7A1P22680 504 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 GTF2A2P52657 109 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 NOL9Q5SY16 702 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 ZSCAN29Q8IWY8 852 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 TEX11Q8IYF3 940 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 LRRCC1Q9C099 1032 aa12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 OSBPL5Q9H0X9 879 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-206ENST00000553437 GPR25O00155 361 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 SMARCA5O60264 1052 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 TBC1D12O60347 775 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 PLCG2P16885 1265 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 ATP5JP18859 108 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 DYNLL1P63167 89 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 PPATQ06203 517 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 PPIL2Q13356 520 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 ZNF296Q8WUU4 475 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 CRBNQ96SW2 442 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 MCOLN1Q9GZU1 580 aa12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 COL2A1P02458 1487 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-206ENST00000553437 AKAP11Q9UKA4 1901 aa12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 CCL15-CCL14A0A0B4J2E2 113 aa12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 MAP3K12Q12852 859 aa12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 TTF1Q15361 905 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 CCL15Q16663 113 aa12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 TMED8Q6PL24 325 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 EDC3Q96F86 508 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 NOL10Q9BSC4 688 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 BCL11AQ9H165 835 aa12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 KCNH4Q9UQ05 1017 aa12.51□□□□□ -0.41
CCDC88C-206ENST00000553437 GOLIM4O00461 696 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 CETPP11597 493 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 CRHR2Q13324 411 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 SNAPC2Q13487 334 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 DGKZQ13574 1117 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 MOGSQ13724 837 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 RRP1BQ14684 758 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 OTUD7BQ6GQQ9 843 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 MAPKAPK5Q8IW41 473 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 SCYL3Q8IZE3 742 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 FAM43AQ8N2R8 423 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 MIGA1Q8NAN2 632 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 TGFBRAP1Q8WUH2 860 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 DNAJC2Q99543 621 aaKnown RBP12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 BOLA2Q9H3K6 86 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 MYH2Q9UKX2 1941 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 OTOFQ9HC10 1997 aa12.5□□□□□ -0.41
CCDC88C-206ENST00000553437 FLT1P17948 1338 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 TCRBV5S4A2TA0A5A2 114 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms