RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 NCOR1O75376 2440 aa6.67□□□□□ -1.34
CKAP4-203ENST00000553039 ZNF646O15015 1829 aaPredicted RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 HTTP42858 3142 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 TTLL13PA6NNM8 815 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 TCP10L2B9ZVM9 353 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 PCCAP05165 728 aaPredicted RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 CD44P16070 742 aaKnown RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 PDE3AQ14432 1141 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 AAK1Q2M2I8 961 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 TXNRD3Q86VQ6 643 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 CCDC191Q8NCU4 936 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 ZKSCAN4Q969J2 545 aaPredicted RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 MS4A3Q96HJ5 214 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 TEPSINQ96N21 525 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 CCDC85AQ96PX6 553 aaPredicted RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 WRNIP1Q96S55 665 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 MPHOSPH8Q99549 860 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 LRFN3Q9BTN0 628 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 TDRD3Q9H7E2 651 aaKnown RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 DBF4Q9UBU7 674 aaPredicted RBP6.66□□□□□ -1.34
CKAP4-203ENST00000553039 SNCAIPQ9Y6H5 919 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 CENPFP49454 3210 aa6.66□□□□□ -1.34
CKAP4-203ENST00000553039 LAMA3Q16787 3333 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 PER1O15534 1290 aaPredicted RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 SSTR3P32745 418 aaPredicted RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 FOXK2Q01167 660 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 PDE4CQ08493 712 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 SHHQ15465 462 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 AKNAD1Q5T1N1 836 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 ZNF804AQ7Z570 1209 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 TRMT44Q8IYL2 757 aaKnown RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 DZIP1LQ8IYY4 767 aaKnown RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 RETREG2Q8NC44 543 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 SMCR8Q8TEV9 937 aaPredicted RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 DDX12PQ92771 950 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 GAS2L1Q99501 681 aaPredicted RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 ZNF341Q9BYN7 854 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 TMEM39BQ9GZU3 492 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 TTYH1Q9H313 450 aaPredicted RBP6.65□□□□□ -1.34
CKAP4-203ENST00000553039 TMOD2Q9NZR1 351 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 THEGQ9P2T0 379 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 SLC45A1Q9Y2W3 748 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 UNC80Q8N2C7 3258 aa6.65□□□□□ -1.34
CKAP4-203ENST00000553039 ANKRD36CQ5JPF3 1778 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 TAF1P21675 1872 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.64□□□□□ -1.35
CKAP4-203ENST00000553039 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.64□□□□□ -1.35
CKAP4-203ENST00000553039 GPR37L1O60883 481 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 CYP2C8P10632 490 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 COL6A1P12109 1028 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 IL1R1P14778 569 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 LRRC26Q2I0M4 334 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 FAM83AQ86UY5 434 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 CERS5Q8N5B7 392 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 PDCD7Q8N8D1 485 aaKnown RBP6.64□□□□□ -1.35
CKAP4-203ENST00000553039 PROCA1Q8NCQ7 364 aaPredicted RBP6.64□□□□□ -1.35
CKAP4-203ENST00000553039 PPM1EQ8WY54 764 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 MRIQ9BWK5 157 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 CHMP4AQ9BY43 222 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 NPDC1Q9NQX5 325 aaPredicted RBP6.64□□□□□ -1.35
CKAP4-203ENST00000553039 CWC25Q9NXE8 425 aaPredicted RBP6.64□□□□□ -1.35
CKAP4-203ENST00000553039 PCDHAC2Q9Y5I4 1007 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 SCN9AQ15858 1988 aa6.64□□□□□ -1.35
CKAP4-203ENST00000553039 TBC1D12O60347 775 aa6.63□□□□□ -1.35
CKAP4-203ENST00000553039 HSPA5P11021 654 aaKnown RBP6.63□□□□□ -1.35
CKAP4-203ENST00000553039 HDLBPQ00341 1268 aaKnown RBP6.63□□□□□ -1.35
CKAP4-203ENST00000553039 CNGB1Q14028 1251 aaPredicted RBP6.63□□□□□ -1.35
CKAP4-203ENST00000553039 GRIN2CQ14957 1233 aa6.63□□□□□ -1.35
CKAP4-203ENST00000553039 NFE2L2Q16236 605 aa6.63□□□□□ -1.35
CKAP4-203ENST00000553039 FKBP1CQ5VVH2 108 aa6.63□□□□□ -1.35
CKAP4-203ENST00000553039 C15orf52Q6ZUT6 534 aaKnown RBP6.63□□□□□ -1.35
CKAP4-203ENST00000553039 TTLL11Q8NHH1 800 aa6.63□□□□□ -1.35
CKAP4-203ENST00000553039 SENP6Q9GZR1 1112 aaPredicted RBP6.63□□□□□ -1.35
CKAP4-203ENST00000553039 ZNF576Q9H609 170 aa6.63□□□□□ -1.35
CKAP4-203ENST00000553039 TTF2Q9UNY4 1162 aaKnown RBP6.63□□□□□ -1.35
CKAP4-203ENST00000553039 SIPA1L3O60292 1781 aaPredicted RBP6.62□□□□□ -1.35
CKAP4-203ENST00000553039 SSC5DA1L4H1 1573 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 PFASO15067 1338 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 GCLCP48506 637 aaPredicted RBP6.62□□□□□ -1.35
CKAP4-203ENST00000553039 MRE11P49959 708 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 CTSWP56202 376 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 HDGFL1Q5TGJ6 251 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 TMCO4Q5TGY1 634 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 GPAT2Q6NUI2 795 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 MIGA2Q7L4E1 593 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 PHOX2BQ99453 314 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 FAM217BQ9NTX9 383 aaPredicted RBP6.62□□□□□ -1.35
CKAP4-203ENST00000553039 CHPF2Q9P2E5 772 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 PNMA3Q9UL41 463 aa6.62□□□□□ -1.35
CKAP4-203ENST00000553039 DDX60Q8IY21 1712 aaKnown RBP6.62□□□□□ -1.35
CKAP4-203ENST00000553039 PATL2C9JE40 543 aaKnown RBP6.61□□□□□ -1.35
CKAP4-203ENST00000553039 SMIM22K7EJ46 135 aa6.61□□□□□ -1.35
CKAP4-203ENST00000553039 DDX58O95786 925 aaKnown RBP6.61□□□□□ -1.35
CKAP4-203ENST00000553039 HOXB7P09629 217 aa6.61□□□□□ -1.35
CKAP4-203ENST00000553039 XRCC5P13010 732 aaKnown RBP6.61□□□□□ -1.35
CKAP4-203ENST00000553039 BMP1P13497 986 aa6.61□□□□□ -1.35
CKAP4-203ENST00000553039 CRKP46108 304 aa6.61□□□□□ -1.35
CKAP4-203ENST00000553039 LMOD3Q0VAK6 560 aa6.61□□□□□ -1.35
CKAP4-203ENST00000553039 TMEM259Q4ZIN3 620 aa6.61□□□□□ -1.35
CKAP4-203ENST00000553039 MFSD14BQ5SR56 506 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms