RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 MYH13Q9UKX3 1938 aa16.45■□□□□ 0.22
CPSF6-204ENST00000547486 SURF6O75683 361 aaKnown RBP16.45■□□□□ 0.22
CPSF6-204ENST00000547486 MAP3K10Q02779 954 aa16.45■□□□□ 0.22
CPSF6-204ENST00000547486 TNNI3KQ59H18 835 aa16.45■□□□□ 0.22
CPSF6-204ENST00000547486 ITPRIPQ8IWB1 547 aa16.45■□□□□ 0.22
CPSF6-204ENST00000547486 FTSJ3Q8IY81 847 aaKnown RBP16.45■□□□□ 0.22
CPSF6-204ENST00000547486 KCNH4Q9UQ05 1017 aa16.45■□□□□ 0.22
CPSF6-204ENST00000547486 FPGT-TNNI3KV9GXZ4 949 aa16.45■□□□□ 0.22
CPSF6-204ENST00000547486 TLR2O60603 784 aa16.44■□□□□ 0.22
CPSF6-204ENST00000547486 PICALMQ13492 652 aa16.44■□□□□ 0.22
CPSF6-204ENST00000547486 ZSCAN29Q8IWY8 852 aaPredicted RBP16.44■□□□□ 0.22
CPSF6-204ENST00000547486 DBNDD2Q9BQY9 259 aa16.44■□□□□ 0.22
CPSF6-204ENST00000547486 ZCCHC17Q9NP64 241 aaKnown RBP16.44■□□□□ 0.22
CPSF6-204ENST00000547486 GPR108Q9NPR9 543 aa16.44■□□□□ 0.22
CPSF6-204ENST00000547486 SNRKQ9NRH2 765 aa16.44■□□□□ 0.22
CPSF6-204ENST00000547486 ZBED9Q6R2W3 1325 aa16.44■□□□□ 0.22
CPSF6-204ENST00000547486 CENPFP49454 3210 aa16.43■□□□□ 0.22
CPSF6-204ENST00000547486 UQCRFS1P1P0C7P4 283 aa16.43■□□□□ 0.22
CPSF6-204ENST00000547486 PANK1Q8TE04 598 aa16.43■□□□□ 0.22
CPSF6-204ENST00000547486 ARHGAP39Q9C0H5 1083 aa16.43■□□□□ 0.22
CPSF6-204ENST00000547486 RAI14Q9P0K7 980 aa16.43■□□□□ 0.22
CPSF6-204ENST00000547486 NOP58Q9Y2X3 529 aaKnown RBP16.43■□□□□ 0.22
CPSF6-204ENST00000547486 PDHXO00330 501 aa16.42■□□□□ 0.22
CPSF6-204ENST00000547486 PTPRAP18433 802 aa16.42■□□□□ 0.22
CPSF6-204ENST00000547486 OS9Q13438 667 aaPredicted RBP16.42■□□□□ 0.22
CPSF6-204ENST00000547486 ANKRD23Q86SG2 305 aa16.42■□□□□ 0.22
CPSF6-204ENST00000547486 SCYL3Q8IZE3 742 aa16.42■□□□□ 0.22
CPSF6-204ENST00000547486 LRP2BPQ9P2M1 347 aa16.42■□□□□ 0.22
CPSF6-204ENST00000547486 POTEFA5A3E0 1075 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 LDHCP07864 332 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 GSTO1P78417 241 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 TTC39AQ5SRH9 613 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 GPAT2Q6NUI2 795 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 C17orf99Q6UX52 265 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 ARMC5Q96C12 935 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 TLR7Q9NYK1 1049 aaKnown RBP16.41■□□□□ 0.22
CPSF6-204ENST00000547486 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.41■□□□□ 0.22
CPSF6-204ENST00000547486 CPA4Q9UI42 421 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 ZHX2Q9Y6X8 837 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 MYH2Q9UKX2 1941 aa16.41■□□□□ 0.22
CPSF6-204ENST00000547486 FAM196BA6NMK8 535 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 CXCL11O14625 94 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 ECM2O94769 699 aaPredicted RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 CYP2E1P05181 493 aaPredicted RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 CTGFP29279 349 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 LACTBP83111 547 aaPredicted RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 CCDC158Q5M9N0 1113 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 CEP85Q6P2H3 762 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 SH3RF3Q8TEJ3 882 aaPredicted RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 EAF2Q96CJ1 260 aaPredicted RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 CCDC8Q9H0W5 538 aaPredicted RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 DBNLQ9UJU6 430 aaKnown RBP16.4■□□□□ 0.22
CPSF6-204ENST00000547486 AFG3L2Q9Y4W6 797 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 PTCH2Q9Y6C5 1203 aa16.4■□□□□ 0.22
CPSF6-204ENST00000547486 TBC1D12O60347 775 aa16.39■□□□□ 0.21
CPSF6-204ENST00000547486 CTNND1O60716 968 aaKnown RBP16.39■□□□□ 0.21
CPSF6-204ENST00000547486 ADGRA1Q86SQ6 560 aa16.39■□□□□ 0.21
CPSF6-204ENST00000547486 CCDC84Q86UT8 332 aaPredicted RBP16.39■□□□□ 0.21
CPSF6-204ENST00000547486 ZNF512BQ96KM6 892 aaPredicted RBP16.39■□□□□ 0.21
CPSF6-204ENST00000547486 PICK1Q9NRD5 415 aa16.39■□□□□ 0.21
CPSF6-204ENST00000547486 ADGRA2Q96PE1 1338 aa16.39■□□□□ 0.21
CPSF6-204ENST00000547486 A0A0G2JLL6 359 aaPredicted RBP16.38■□□□□ 0.21
CPSF6-204ENST00000547486 MAP4K4O95819 1239 aaPredicted RBP16.38■□□□□ 0.21
CPSF6-204ENST00000547486 CYP2C8P10632 490 aa16.38■□□□□ 0.21
CPSF6-204ENST00000547486 ZAP70P43403 619 aa16.38■□□□□ 0.21
CPSF6-204ENST00000547486 RRP1BQ14684 758 aaKnown RBP16.38■□□□□ 0.21
CPSF6-204ENST00000547486 ARHGEF6Q15052 776 aa16.38■□□□□ 0.21
CPSF6-204ENST00000547486 PRRT2Q7Z6L0 340 aaPredicted RBP16.38■□□□□ 0.21
CPSF6-204ENST00000547486 OSBPL5Q9H0X9 879 aaPredicted RBP16.38■□□□□ 0.21
CPSF6-204ENST00000547486 PIH1D3Q9NQM4 214 aaKnown RBP16.38■□□□□ 0.21
CPSF6-204ENST00000547486 NAA16Q6N069 864 aaPredicted RBP16.37■□□□□ 0.21
CPSF6-204ENST00000547486 TEX11Q8IYF3 940 aa16.37■□□□□ 0.21
CPSF6-204ENST00000547486 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.37■□□□□ 0.21
CPSF6-204ENST00000547486 AATFQ9NY61 560 aaKnown RBP eCLIP16.37■□□□□ 0.21
CPSF6-204ENST00000547486 MKI67P46013 3256 aaKnown RBP16.37■□□□□ 0.21
CPSF6-204ENST00000547486 AK9Q5TCS8 1911 aa16.37■□□□□ 0.21
CPSF6-204ENST00000547486 EN2P19622 333 aaPredicted RBP16.36■□□□□ 0.21
CPSF6-204ENST00000547486 PPP4CP60510 307 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 KIF22Q14807 665 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 ZNF333Q96JL9 665 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 TRIM47Q96LD4 638 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 EXOC6BQ9Y2D4 811 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 NDUFB9Q9Y6M9 179 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 BRCA2P51587 3418 aa16.36■□□□□ 0.21
CPSF6-204ENST00000547486 TRIM75PA6NK02 468 aa16.35■□□□□ 0.21
CPSF6-204ENST00000547486 PSMC4P43686 418 aa16.35■□□□□ 0.21
CPSF6-204ENST00000547486 SLC9C1Q4G0N8 1177 aa16.35■□□□□ 0.21
CPSF6-204ENST00000547486 FASTKD5Q7L8L6 764 aaKnown RBP16.35■□□□□ 0.21
CPSF6-204ENST00000547486 SH3TC2Q8TF17 1288 aa16.35■□□□□ 0.21
CPSF6-204ENST00000547486 TGFBRAP1Q8WUH2 860 aa16.35■□□□□ 0.21
CPSF6-204ENST00000547486 BAG3O95817 575 aa16.34■□□□□ 0.21
CPSF6-204ENST00000547486 MYCP01106 439 aaPredicted RBP16.34■□□□□ 0.21
CPSF6-204ENST00000547486 BCRP11274 1271 aa16.34■□□□□ 0.21
CPSF6-204ENST00000547486 GADL1Q6ZQY3 521 aa16.34■□□□□ 0.21
CPSF6-204ENST00000547486 MAPKAPK5Q8IW41 473 aa16.34■□□□□ 0.21
CPSF6-204ENST00000547486 ANTXR1Q9H6X2 564 aa16.34■□□□□ 0.21
CPSF6-204ENST00000547486 GNRH1P01148 92 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 OSBPP22059 807 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 CAP2P40123 477 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms