RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 ATP10DQ9P241 1426 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 PPEF1O14829 653 aaPredicted RBP11.67□□□□□ -0.54
TOP3A-208ENST00000542570 PDIA3P30101 505 aaKnown RBP11.67□□□□□ -0.54
TOP3A-208ENST00000542570 RBM6P78332 1123 aaKnown RBP11.67□□□□□ -0.54
TOP3A-208ENST00000542570 PLS1Q14651 629 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 LETM2Q2VYF4 491 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 KRT40Q6A162 431 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 ZSCAN16Q9H4T2 348 aaPredicted RBP11.67□□□□□ -0.54
TOP3A-208ENST00000542570 HDAC9Q9UKV0 1011 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.67□□□□□ -0.54
TOP3A-208ENST00000542570 VWA3AA6NCI4 1184 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 ALDH1B1P30837 517 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 GPKOWQ92917 476 aaPredicted RBP eCLIP11.67□□□□□ -0.54
TOP3A-208ENST00000542570 KIF2CQ99661 725 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 NMT2O60551 498 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 TPM2P07951 284 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 USH1GQ495M9 461 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 C3orf67Q6ZVT6 689 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 LUZP1Q86V48 1076 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 ZNF654Q8IZM8 581 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 TMEM63CQ9P1W3 806 aa11.67□□□□□ -0.54
TOP3A-208ENST00000542570 BTBD18B2RXH4 712 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 ADCY5O95622 1261 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 PDE6BP35913 854 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 CLEC4GQ6UXB4 293 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 TTC6Q86TZ1 520 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 GTF3C6Q969F1 213 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 TRMT1Q9NXH9 659 aaKnown RBP11.66□□□□□ -0.54
TOP3A-208ENST00000542570 ESPNB1AK53 854 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 LMOD1P29536 600 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-208ENST00000542570 EPS15P42566 896 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 LMBRD1Q9NUN5 540 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 SAMM50Q9Y512 469 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 RFX5P48382 616 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-208ENST00000542570 GPIHBP1Q8IV16 184 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 USP28Q96RU2 1077 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 HOMER2Q9NSB8 354 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 BSDC1Q9NW68 430 aaPredicted RBP11.66□□□□□ -0.54
TOP3A-208ENST00000542570 MTMR6Q9Y217 621 aa11.66□□□□□ -0.54
TOP3A-208ENST00000542570 XDHP47989 1333 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 USP17L3A6NCW0 530 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 USP17L4A6NCW7 530 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 BRD1O95696 1058 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 CCDC173Q0VFZ6 552 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 NKX1-1Q15270 411 aaPredicted RBP11.65□□□□□ -0.54
TOP3A-208ENST00000542570 TMEM132AQ24JP5 1023 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 RABL6Q3YEC7 729 aaPredicted RBP11.65□□□□□ -0.54
TOP3A-208ENST00000542570 USP17L1Q7RTZ2 530 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 ZNF34Q8IZ26 560 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 FAM84BQ96KN1 310 aaPredicted RBP11.65□□□□□ -0.54
TOP3A-208ENST00000542570 C3P01024 1663 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 TRIM75PA6NK02 468 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 UBE3CQ15386 1083 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 ARHGAP27Q6ZUM4 889 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 MIGA2Q7L4E1 593 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 MRPS27Q92552 414 aaKnown RBP11.65□□□□□ -0.54
TOP3A-208ENST00000542570 EEF2KMTQ96G04 330 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 CEP131Q9UPN4 1083 aa11.65□□□□□ -0.54
TOP3A-208ENST00000542570 OFD1O75665 1012 aa11.65□□□□□ -0.55
TOP3A-208ENST00000542570 PLCG2P16885 1265 aa11.65□□□□□ -0.55
TOP3A-208ENST00000542570 RASGRP4Q8TDF6 673 aa11.65□□□□□ -0.55
TOP3A-208ENST00000542570 STRBPQ96SI9 672 aaKnown RBP11.65□□□□□ -0.55
TOP3A-208ENST00000542570 CCDC39Q9UFE4 941 aa11.65□□□□□ -0.55
TOP3A-208ENST00000542570 GRAPQ13588 217 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 GRAPLQ8TC17 118 aaPredicted RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TMEM87BQ96K49 555 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TM6SF1Q9BZW5 370 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 RBSNQ9H1K0 784 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 GPR108Q9NPR9 543 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 ZBTB21Q9ULJ3 1066 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TRIM28Q13263 835 aaKnown RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 DLGAP5Q15398 846 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TXNRD3Q86VQ6 643 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TEKT1Q969V4 418 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TTC12Q9H892 705 aaPredicted RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 FAM170AA1A519 330 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 IPO7O95373 1038 aaKnown RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 PARP1P09874 1014 aaKnown RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 CALM1P0DP23 149 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 CALM2P0DP24 149 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 CALM3P0DP25 149 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 ATP2B4P23634 1241 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 RAD51AP2Q09MP3 1159 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 TBC1D10CQ8IV04 446 aa11.64□□□□□ -0.55
TOP3A-208ENST00000542570 LEO1Q8WVC0 666 aaPredicted RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 DDX19AQ9NUU7 478 aaKnown RBP11.64□□□□□ -0.55
TOP3A-208ENST00000542570 NCOA3Q9Y6Q9 1424 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 GDF11O95390 407 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 GLIPR1L2Q4G1C9 344 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 PRR5LQ6MZQ0 368 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 LRSAM1Q6UWE0 723 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 FANCBQ8NB91 859 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 ANO10Q9NW15 660 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 MYOM1P52179 1685 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 SLC16A2P36021 539 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 STOX1Q6ZVD7 989 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 GAS2L3Q86XJ1 694 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 CLIC6Q96NY7 704 aa11.63□□□□□ -0.55
TOP3A-208ENST00000542570 MAGEC2Q9UBF1 373 aaPredicted RBP11.63□□□□□ -0.55
TOP3A-208ENST00000542570 UBR1Q8IWV7 1749 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms