RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 APOBEC3HQ6NTF7 200 aaKnown RBP20.97■□□□□ 0.95
CLIP1-215ENST00000541108 TEX11Q8IYF3 940 aa20.97■□□□□ 0.95
CLIP1-215ENST00000541108 AGBL3Q8NEM8 1001 aa20.97■□□□□ 0.95
CLIP1-215ENST00000541108 TGFBRAP1Q8WUH2 860 aa20.97■□□□□ 0.95
CLIP1-215ENST00000541108 SH2B1Q9NRF2 756 aaPredicted RBP20.97■□□□□ 0.95
CLIP1-215ENST00000541108 RAD17O75943 681 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 NT5C2P49902 561 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 CTDSPL2Q05D32 466 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 TOB2Q14106 344 aaPredicted RBP20.96■□□□□ 0.95
CLIP1-215ENST00000541108 Q6ZUG5 572 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 AMOTL1Q8IY63 956 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 INTS4Q96HW7 963 aaKnown RBP20.96■□□□□ 0.95
CLIP1-215ENST00000541108 GMLQ99445 158 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 MCM9Q9NXL9 1143 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 SLC3A2P08195 630 aaKnown RBP20.96■□□□□ 0.95
CLIP1-215ENST00000541108 MMP14P50281 582 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 CXCL9Q07325 125 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 TCEANC2Q96MN5 208 aa20.96■□□□□ 0.95
CLIP1-215ENST00000541108 TNIP1Q15025 636 aa20.95■□□□□ 0.94
CLIP1-215ENST00000541108 C12orf60Q5U649 245 aa20.95■□□□□ 0.94
CLIP1-215ENST00000541108 MTA3Q9BTC8 594 aa20.95■□□□□ 0.94
CLIP1-215ENST00000541108 CDK5RAP2Q96SN8 1893 aa20.95■□□□□ 0.94
CLIP1-215ENST00000541108 FGD1P98174 961 aa20.94■□□□□ 0.94
CLIP1-215ENST00000541108 CIAPIN1Q6FI81 312 aa20.94■□□□□ 0.94
CLIP1-215ENST00000541108 OGFOD1Q8N543 542 aa20.94■□□□□ 0.94
CLIP1-215ENST00000541108 USP40Q9NVE5 1235 aa20.94■□□□□ 0.94
CLIP1-215ENST00000541108 HDAC9Q9UKV0 1011 aa20.94■□□□□ 0.94
CLIP1-215ENST00000541108 FLT1P17948 1338 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 NEDD4P46934 1319 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 CDC42EP5Q6NZY7 148 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 NOL8Q76FK4 1167 aaKnown RBP20.93■□□□□ 0.94
CLIP1-215ENST00000541108 TPCN1Q9ULQ1 816 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 FOCADQ5VW36 1801 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 B4E1Z4 1266 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 FZD9O00144 591 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 PRC1O43663 620 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 USP17L8P0C7I0 530 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 EVCP57679 992 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 MAPKAPK5Q8IW41 473 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 SPRYD3Q8NCJ5 442 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 TMEM87BQ96K49 555 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 CWC22Q9HCG8 908 aaKnown RBP20.93■□□□□ 0.94
CLIP1-215ENST00000541108 ZSWIM5Q9P217 1185 aa20.93■□□□□ 0.94
CLIP1-215ENST00000541108 LAMB1P07942 1786 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 NPM3O75607 178 aaKnown RBP20.92■□□□□ 0.94
CLIP1-215ENST00000541108 WDHD1O75717 1129 aaPredicted RBP20.92■□□□□ 0.94
CLIP1-215ENST00000541108 RBM5P52756 815 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLIP1-215ENST00000541108 ANTXR2P58335 489 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 RASSF7Q02833 373 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 PDE4BQ07343 736 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 ESR2Q92731 530 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 BRF1Q92994 677 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 TACC3Q9Y6A5 838 aa20.92■□□□□ 0.94
CLIP1-215ENST00000541108 ROBO3Q96MS0 1386 aa20.91■□□□□ 0.94
CLIP1-215ENST00000541108 NAV1Q8NEY1 1877 aa20.91■□□□□ 0.94
CLIP1-215ENST00000541108 CYP2D7A0A087X1C5 515 aa20.91■□□□□ 0.94
CLIP1-215ENST00000541108 ORC4O43929 436 aa20.91■□□□□ 0.94
CLIP1-215ENST00000541108 ME3Q16798 604 aa20.91■□□□□ 0.94
CLIP1-215ENST00000541108 SLKQ9H2G2 1235 aaPredicted RBP20.91■□□□□ 0.94
CLIP1-215ENST00000541108 INCENPQ9NQS7 918 aa20.91■□□□□ 0.94
CLIP1-215ENST00000541108 KDM4AO75164 1064 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 POLR3DP05423 398 aaPredicted RBP20.9■□□□□ 0.94
CLIP1-215ENST00000541108 RPS12P25398 132 aaKnown RBP20.9■□□□□ 0.94
CLIP1-215ENST00000541108 DDIT3P35638 169 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 CFAP100Q494V2 611 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 ARHGAP27Q6ZUM4 889 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 CHST3Q7LGC8 479 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 LARP6Q9BRS8 491 aaKnown RBP20.9■□□□□ 0.94
CLIP1-215ENST00000541108 IDI2Q9BXS1 227 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 LRRC2Q9BYS8 371 aa20.9■□□□□ 0.94
CLIP1-215ENST00000541108 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLIP1-215ENST00000541108 LMNB1P20700 586 aa20.89■□□□□ 0.94
CLIP1-215ENST00000541108 PRELPP51888 382 aa20.89■□□□□ 0.94
CLIP1-215ENST00000541108 EIF6P56537 245 aaKnown RBP20.89■□□□□ 0.94
CLIP1-215ENST00000541108 CYB5R4Q7L1T6 521 aa20.89■□□□□ 0.94
CLIP1-215ENST00000541108 MTMR14Q8NCE2 650 aa20.89■□□□□ 0.94
CLIP1-215ENST00000541108 ZNF274Q96GC6 653 aaPredicted RBP20.89■□□□□ 0.94
CLIP1-215ENST00000541108 ZNF287Q9HBT7 754 aa20.89■□□□□ 0.94
CLIP1-215ENST00000541108 TOMM22Q9NS69 142 aa20.89■□□□□ 0.94
CLIP1-215ENST00000541108 ANGEL1Q9UNK9 670 aaKnown RBP20.89■□□□□ 0.94
CLIP1-215ENST00000541108 ZBTB12Q9Y330 459 aaPredicted RBP20.89■□□□□ 0.94
CLIP1-215ENST00000541108 DDX60LQ5H9U9 1706 aaKnown RBP20.89■□□□□ 0.93
CLIP1-215ENST00000541108 ECM29Q5VYK3 1845 aa20.89■□□□□ 0.93
CLIP1-215ENST00000541108 TTC6Q86TZ1 520 aa20.89■□□□□ 0.93
CLIP1-215ENST00000541108 CHMP4CQ96CF2 233 aa20.89■□□□□ 0.93
CLIP1-215ENST00000541108 CIZ1Q9ULV3 898 aaPredicted RBP20.89■□□□□ 0.93
CLIP1-215ENST00000541108 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.89■□□□□ 0.93
CLIP1-215ENST00000541108 ADAMTSL1Q8N6G6 1762 aa20.88■□□□□ 0.93
CLIP1-215ENST00000541108 CYP2D6P10635 497 aa20.88■□□□□ 0.93
CLIP1-215ENST00000541108 LIFRP42702 1097 aa20.88■□□□□ 0.93
CLIP1-215ENST00000541108 SART3Q15020 963 aaKnown RBP20.88■□□□□ 0.93
CLIP1-215ENST00000541108 RRP12Q5JTH9 1297 aaKnown RBP20.88■□□□□ 0.93
CLIP1-215ENST00000541108 IGDCC4Q8TDY8 1250 aa20.88■□□□□ 0.93
CLIP1-215ENST00000541108 MYH1P12882 1939 aa20.88■□□□□ 0.93
CLIP1-215ENST00000541108 SMIM22K7EJ46 135 aa20.87■□□□□ 0.93
CLIP1-215ENST00000541108 LARGE1O95461 756 aa20.87■□□□□ 0.93
CLIP1-215ENST00000541108 PLCD1P51178 756 aa20.87■□□□□ 0.93
CLIP1-215ENST00000541108 TMTC2Q8N394 836 aa20.87■□□□□ 0.93
CLIP1-215ENST00000541108 DPF2Q92785 391 aa20.87■□□□□ 0.93
CLIP1-215ENST00000541108 PRMT6Q96LA8 375 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms