RNA–Protein interactions for RNA: ENST00000539746.1

VTN-202, Transcript of vitronectin, humanhuman

TSL 2

Gene VTN, Length 609 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTN-202ENST00000539746 USP40Q9NVE5 1235 aa13.9□□□□□ -0.18
VTN-202ENST00000539746 BRCA1P38398 1863 aaKnown RBP13.89□□□□□ -0.19
VTN-202ENST00000539746 COL2A1P02458 1487 aaPredicted RBP13.89□□□□□ -0.19
VTN-202ENST00000539746 CCDC196A0A1B0GTZ2 297 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 FZD9O00144 591 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 NFKBIEO00221 500 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 ORC4O43929 436 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 CDKL5O76039 1030 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 CALM1P0DP23 149 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 CALM2P0DP24 149 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 CALM3P0DP25 149 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 OLFM4Q6UX06 510 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 KIAA0825Q8IV33 1275 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 IDI2Q9BXS1 227 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 TOMM22Q9NS69 142 aa13.89□□□□□ -0.19
VTN-202ENST00000539746 CIZ1Q9ULV3 898 aaPredicted RBP13.89□□□□□ -0.19
VTN-202ENST00000539746 ROBO3Q96MS0 1386 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 WTIPA6NIX2 430 aaPredicted RBP13.88□□□□□ -0.19
VTN-202ENST00000539746 MINDY4BA8MYZ0 360 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 PSMD14O00487 310 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 PDCP20941 246 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 DIXDC1Q155Q3 683 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 GPR162Q16538 588 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 ZNF444Q8N0Y2 327 aaPredicted RBP13.88□□□□□ -0.19
VTN-202ENST00000539746 EHD4Q9H223 541 aa13.88□□□□□ -0.19
VTN-202ENST00000539746 FER1L6Q2WGJ9 1857 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 F8W031 263 aaPredicted RBP13.87□□□□□ -0.19
VTN-202ENST00000539746 RAD17O75943 681 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 LIFRP42702 1097 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 CXCL9Q07325 125 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 FOXP4Q8IVH2 680 aaPredicted RBP13.87□□□□□ -0.19
VTN-202ENST00000539746 NLGN2Q8NFZ4 835 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 SH3RF3Q8TEJ3 882 aaPredicted RBP13.87□□□□□ -0.19
VTN-202ENST00000539746 TGFBRAP1Q8WUH2 860 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 CCDC17Q96LX7 622 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 KIF2CQ99661 725 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 IL25Q9H293 177 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 JAG2Q9Y219 1238 aa13.87□□□□□ -0.19
VTN-202ENST00000539746 USP17L12C9JPN9 530 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 USP17L21D6R901 530 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 ZNF280AP59817 542 aaPredicted RBP13.86□□□□□ -0.19
VTN-202ENST00000539746 CFAP100Q494V2 611 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 C12orf60Q5U649 245 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 CTR9Q6PD62 1173 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 ADGRA1Q86SQ6 560 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 FAM83AQ86UY5 434 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 CRACR2BQ8N4Y2 399 aaPredicted RBP13.86□□□□□ -0.19
VTN-202ENST00000539746 CERS5Q8N5B7 392 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 RGS22Q8NE09 1264 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 ZNF274Q96GC6 653 aaPredicted RBP13.86□□□□□ -0.19
VTN-202ENST00000539746 TBC1D2Q9BYX2 928 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 GINM1Q9NU53 330 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 PI4KBQ9UBF8 816 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 HERC5Q9UII4 1024 aaKnown RBP13.86□□□□□ -0.19
VTN-202ENST00000539746 ANGEL1Q9UNK9 670 aaKnown RBP13.86□□□□□ -0.19
VTN-202ENST00000539746 PPP2R3BQ9Y5P8 575 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 FLT1P17948 1338 aa13.86□□□□□ -0.19
VTN-202ENST00000539746 IQCA1LA6NCM1 817 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 SPDYE2BA6NHP3 402 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 CCDC69A6NI79 296 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 TSPY2A6NKD2 308 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 YDJCA8MPS7 323 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 PRC1O43663 620 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 FGRP09769 529 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 SPDYE6P0CI01 402 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 DYNLL1P63167 89 aaKnown RBP13.85□□□□□ -0.19
VTN-202ENST00000539746 HMGN5P82970 282 aaKnown RBP13.85□□□□□ -0.19
VTN-202ENST00000539746 NFXL1Q6ZNB6 911 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 APOBEC3FQ8IUX4 373 aaKnown RBP13.85□□□□□ -0.19
VTN-202ENST00000539746 RASEFQ8IZ41 740 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 SDR42E1Q8WUS8 393 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 TTC14Q96N46 770 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 GMLQ99445 158 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 LLPHQ9BRT6 129 aaKnown RBP13.85□□□□□ -0.19
VTN-202ENST00000539746 UPF3BQ9BZI7 483 aaKnown RBP13.85□□□□□ -0.19
VTN-202ENST00000539746 RBM27Q9P2N5 1060 aaKnown RBP13.85□□□□□ -0.19
VTN-202ENST00000539746 SERPINB13Q9UIV8 391 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 PALD1Q9ULE6 856 aa13.85□□□□□ -0.19
VTN-202ENST00000539746 SCNN1DP51172 638 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 RHBDL3P58872 404 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 HAND2P61296 217 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 NUCB2P80303 420 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 APOBEC3HQ6NTF7 200 aaKnown RBP13.84□□□□□ -0.19
VTN-202ENST00000539746 CDC42EP5Q6NZY7 148 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 ZSCAN29Q8IWY8 852 aaPredicted RBP13.84□□□□□ -0.19
VTN-202ENST00000539746 OSBPL5Q9H0X9 879 aaPredicted RBP13.84□□□□□ -0.19
VTN-202ENST00000539746 SLKQ9H2G2 1235 aaPredicted RBP13.84□□□□□ -0.19
VTN-202ENST00000539746 EPB41L4AQ9HCS5 686 aaPredicted RBP13.84□□□□□ -0.19
VTN-202ENST00000539746 MYOZ2Q9NPC6 264 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 SYNPO2Q9UMS6 1093 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 TIAM2Q8IVF5 1701 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 CHD4Q14839 1912 aa13.84□□□□□ -0.19
VTN-202ENST00000539746 PSME4Q14997 1843 aa13.83□□□□□ -0.2
VTN-202ENST00000539746 CPLX1O14810 134 aa13.83□□□□□ -0.2
VTN-202ENST00000539746 IFIT3O14879 490 aaKnown RBP13.83□□□□□ -0.2
VTN-202ENST00000539746 RANBP6O60518 1105 aaKnown RBP13.83□□□□□ -0.2
VTN-202ENST00000539746 TSPY3P0CV98 308 aa13.83□□□□□ -0.2
VTN-202ENST00000539746 TSPY8P0CW00 308 aa13.83□□□□□ -0.2
VTN-202ENST00000539746 KIF5BP33176 963 aa13.83□□□□□ -0.2
VTN-202ENST00000539746 WTAPQ15007 396 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms