RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 ATRNL1Q5VV63 1379 aa17.15■□□□□ 0.34
SYNE1-235ENST00000537033 GNRH1P01148 92 aa17.14■□□□□ 0.33
SYNE1-235ENST00000537033 ARID4AP29374 1257 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-235ENST00000537033 LACTBP83111 547 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-235ENST00000537033 SCYL3Q8IZE3 742 aa17.14■□□□□ 0.33
SYNE1-235ENST00000537033 RAI14Q9P0K7 980 aa17.14■□□□□ 0.33
SYNE1-235ENST00000537033 ZSWIM8A7E2V4 1837 aa17.14■□□□□ 0.33
SYNE1-235ENST00000537033 GPR75-ASB3A0A0A6YYF3 556 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 PDHXO00330 501 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 CXCL11O14625 94 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 MAP4K4O95819 1239 aaPredicted RBP17.13■□□□□ 0.33
SYNE1-235ENST00000537033 CAP1Q01518 475 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 PARK7Q99497 189 aaKnown RBP17.13■□□□□ 0.33
SYNE1-235ENST00000537033 NOL10Q9BSC4 688 aaKnown RBP17.13■□□□□ 0.33
SYNE1-235ENST00000537033 TMEM106CQ9BVX2 250 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 LRP2BPQ9P2M1 347 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 PTCH2Q9Y6C5 1203 aa17.13■□□□□ 0.33
SYNE1-235ENST00000537033 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.13■□□□□ 0.33
SYNE1-235ENST00000537033 POTEFA5A3E0 1075 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 TTC39AQ5SRH9 613 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 PI16Q6UXB8 463 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 FASTKD5Q7L8L6 764 aaKnown RBP17.12■□□□□ 0.33
SYNE1-235ENST00000537033 ITPRIPQ8IWB1 547 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 CPA4Q9UI42 421 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 ZHX2Q9Y6X8 837 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 HTTP42858 3142 aa17.12■□□□□ 0.33
SYNE1-235ENST00000537033 DDTLA6NHG4 134 aaPredicted RBP17.11■□□□□ 0.33
SYNE1-235ENST00000537033 PHF20L1A8MW92 1017 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 NPM3O75607 178 aaKnown RBP17.11■□□□□ 0.33
SYNE1-235ENST00000537033 MCAMP43121 646 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 PRMT2P55345 433 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 POLA2Q14181 598 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 CCDC158Q5M9N0 1113 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 DIEXFQ68CQ4 756 aaKnown RBP17.11■□□□□ 0.33
SYNE1-235ENST00000537033 TBC1D9Q6ZT07 1266 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 SH3BP5LQ7L8J4 393 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 MIER1Q8N108 512 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 NSUN4Q96CB9 384 aaKnown RBP17.11■□□□□ 0.33
SYNE1-235ENST00000537033 ZNF333Q96JL9 665 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 ARHGAP39Q9C0H5 1083 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 GPR108Q9NPR9 543 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 DDX4Q9NQI0 724 aaKnown RBP17.11■□□□□ 0.33
SYNE1-235ENST00000537033 PTPRFP10586 1907 aa17.11■□□□□ 0.33
SYNE1-235ENST00000537033 COL2A1P02458 1487 aaPredicted RBP17.11■□□□□ 0.33
SYNE1-235ENST00000537033 CTNND1O60716 968 aaKnown RBP17.1■□□□□ 0.33
SYNE1-235ENST00000537033 SLC34A2O95436 690 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 PTPRAP18433 802 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 RHBDL3P58872 404 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 MAP3K10Q02779 954 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 TNNI3KQ59H18 835 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 C17orf99Q6UX52 265 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 SSH3Q8TE77 659 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 FPGT-TNNI3KV9GXZ4 949 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 PHIPQ8WWQ0 1821 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 ATAD5Q96QE3 1844 aa17.1■□□□□ 0.33
SYNE1-235ENST00000537033 SURF6O75683 361 aaKnown RBP17.09■□□□□ 0.33
SYNE1-235ENST00000537033 HOXD10P28358 340 aa17.09■□□□□ 0.33
SYNE1-235ENST00000537033 ATP8B2P98198 1209 aa17.09■□□□□ 0.33
SYNE1-235ENST00000537033 SLC4A8Q2Y0W8 1093 aa17.09■□□□□ 0.33
SYNE1-235ENST00000537033 GADL1Q6ZQY3 521 aa17.09■□□□□ 0.33
SYNE1-235ENST00000537033 ZNF384Q8TF68 577 aa17.09■□□□□ 0.33
SYNE1-235ENST00000537033 C1orf115Q9H7X2 142 aa17.09■□□□□ 0.33
SYNE1-235ENST00000537033 MGAMO43451 1857 aa17.08■□□□□ 0.33
SYNE1-235ENST00000537033 ADGRA2Q96PE1 1338 aa17.08■□□□□ 0.32
SYNE1-235ENST00000537033 A0A0G2JLL6 359 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-235ENST00000537033 TBC1D12O60347 775 aa17.08■□□□□ 0.32
SYNE1-235ENST00000537033 ECM2O94769 699 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-235ENST00000537033 FMNL1O95466 1100 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-235ENST00000537033 BAG3O95817 575 aa17.08■□□□□ 0.32
SYNE1-235ENST00000537033 PSMC4P43686 418 aa17.08■□□□□ 0.32
SYNE1-235ENST00000537033 MOGSQ13724 837 aa17.08■□□□□ 0.32
SYNE1-235ENST00000537033 NAA16Q6N069 864 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-235ENST00000537033 PRRT2Q7Z6L0 340 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-235ENST00000537033 TEX11Q8IYF3 940 aa17.08■□□□□ 0.32
SYNE1-235ENST00000537033 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.08■□□□□ 0.32
SYNE1-235ENST00000537033 KIAA0100Q14667 2235 aaKnown RBP17.07■□□□□ 0.32
SYNE1-235ENST00000537033 ZBED9Q6R2W3 1325 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 PLCG2P16885 1265 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 GPAT2Q6NUI2 795 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 DBNDD2Q9BQY9 259 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 OSBPL5Q9H0X9 879 aaPredicted RBP17.07■□□□□ 0.32
SYNE1-235ENST00000537033 SNRKQ9NRH2 765 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 SLC45A1Q9Y2W3 748 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 AFG3L2Q9Y4W6 797 aa17.07■□□□□ 0.32
SYNE1-235ENST00000537033 MYPNQ86TC9 1320 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 FOCADQ5VW36 1801 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 TRIM75PA6NK02 468 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 MYCP01106 439 aaPredicted RBP17.06■□□□□ 0.32
SYNE1-235ENST00000537033 CYP2C8P10632 490 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 EN2P19622 333 aaPredicted RBP17.06■□□□□ 0.32
SYNE1-235ENST00000537033 FCGRTP55899 365 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 RAET1EQ8TD07 263 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 SMCR8Q8TEV9 937 aaPredicted RBP17.06■□□□□ 0.32
SYNE1-235ENST00000537033 SH3TC2Q8TF17 1288 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 TRIM47Q96LD4 638 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 SRRDQ9UH36 339 aa17.06■□□□□ 0.32
SYNE1-235ENST00000537033 CDK5RAP2Q96SN8 1893 aa17.05■□□□□ 0.32
SYNE1-235ENST00000537033 CENPFP49454 3210 aa17.05■□□□□ 0.32
SYNE1-235ENST00000537033 IGSF3O75054 1194 aa17.05■□□□□ 0.32
SYNE1-235ENST00000537033 ZNF512BQ96KM6 892 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms