RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DOCK1Q14185 1865 aa14.04□□□□□ -0.16
VPS28-214ENST00000531032 CTGFP29279 349 aa14.04□□□□□ -0.16
VPS28-214ENST00000531032 BTDP43251 543 aa14.04□□□□□ -0.16
VPS28-214ENST00000531032 SCYL3Q8IZE3 742 aa14.04□□□□□ -0.16
VPS28-214ENST00000531032 ZNF384Q8TF68 577 aa14.04□□□□□ -0.16
VPS28-214ENST00000531032 DDX4Q9NQI0 724 aaKnown RBP14.04□□□□□ -0.16
VPS28-214ENST00000531032 CPA4Q9UI42 421 aa14.04□□□□□ -0.16
VPS28-214ENST00000531032 PTPRFP10586 1907 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 GPR75-ASB3A0A0A6YYF3 556 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 DDTLA6NHG4 134 aaPredicted RBP14.03□□□□□ -0.16
VPS28-214ENST00000531032 BCAR3O75815 825 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 GNAI2P04899 355 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 PTPRAP18433 802 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 RHBDL3P58872 404 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 MECOMQ03112 1051 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 GPAT2Q6NUI2 795 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 ERICH6Q7L0X2 663 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 ZSCAN29Q8IWY8 852 aaPredicted RBP14.03□□□□□ -0.16
VPS28-214ENST00000531032 SH3TC2Q8TF17 1288 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 PARK7Q99497 189 aaKnown RBP14.03□□□□□ -0.16
VPS28-214ENST00000531032 PICK1Q9NRD5 415 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 HMG20BQ9P0W2 317 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 TNNQ9UQP3 1299 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 PHIPQ8WWQ0 1821 aa14.03□□□□□ -0.16
VPS28-214ENST00000531032 A0A0G2JLL6 359 aaPredicted RBP14.02□□□□□ -0.17
VPS28-214ENST00000531032 PNMA6EA0A0J9YXQ4 647 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 CTNND1O60716 968 aaKnown RBP14.02□□□□□ -0.17
VPS28-214ENST00000531032 NPM3O75607 178 aaKnown RBP14.02□□□□□ -0.17
VPS28-214ENST00000531032 ARID4AP29374 1257 aaPredicted RBP14.02□□□□□ -0.17
VPS28-214ENST00000531032 PSMC4P43686 418 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 SLC4A8Q2Y0W8 1093 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 PRRT2Q7Z6L0 340 aaPredicted RBP14.02□□□□□ -0.17
VPS28-214ENST00000531032 SPATA5Q8NB90 893 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 GCC1Q96CN9 775 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 TRIM47Q96LD4 638 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 NEUROD6Q96NK8 337 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 PCDH10Q9P2E7 1040 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 SRRDQ9UH36 339 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 AFG3L2Q9Y4W6 797 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 ZHX2Q9Y6X8 837 aa14.02□□□□□ -0.17
VPS28-214ENST00000531032 COL2A1P02458 1487 aaPredicted RBP14.01□□□□□ -0.17
VPS28-214ENST00000531032 MAP4K4O95819 1239 aaPredicted RBP14.01□□□□□ -0.17
VPS28-214ENST00000531032 BCRP11274 1271 aa14.01□□□□□ -0.17
VPS28-214ENST00000531032 OSBPP22059 807 aa14.01□□□□□ -0.17
VPS28-214ENST00000531032 PICALMQ13492 652 aa14.01□□□□□ -0.17
VPS28-214ENST00000531032 PI16Q6UXB8 463 aa14.01□□□□□ -0.17
VPS28-214ENST00000531032 FASTKD5Q7L8L6 764 aaKnown RBP14.01□□□□□ -0.17
VPS28-214ENST00000531032 FRAT1Q92837 279 aaPredicted RBP14.01□□□□□ -0.17
VPS28-214ENST00000531032 NSUN4Q96CB9 384 aaKnown RBP14.01□□□□□ -0.17
VPS28-214ENST00000531032 MGAMO43451 1857 aa14□□□□□ -0.17
VPS28-214ENST00000531032 TBC1D12O60347 775 aa14□□□□□ -0.17
VPS28-214ENST00000531032 SLURP2P0DP57 97 aa14□□□□□ -0.17
VPS28-214ENST00000531032 CYP2C8P10632 490 aa14□□□□□ -0.17
VPS28-214ENST00000531032 HOXD10P28358 340 aa14□□□□□ -0.17
VPS28-214ENST00000531032 GSTO1P78417 241 aa14□□□□□ -0.17
VPS28-214ENST00000531032 GORABQ5T7V8 394 aa14□□□□□ -0.17
VPS28-214ENST00000531032 CLUAP1Q96AJ1 413 aa14□□□□□ -0.17
VPS28-214ENST00000531032 SLC45A1Q9Y2W3 748 aa14□□□□□ -0.17
VPS28-214ENST00000531032 MAST2Q6P0Q8 1798 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 MYPNQ86TC9 1320 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 ECM2O94769 699 aaPredicted RBP13.99□□□□□ -0.17
VPS28-214ENST00000531032 FMNL1O95466 1100 aaPredicted RBP13.99□□□□□ -0.17
VPS28-214ENST00000531032 MYCP01106 439 aaPredicted RBP13.99□□□□□ -0.17
VPS28-214ENST00000531032 LDHCP07864 332 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 UQCRFS1P1P0C7P4 283 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 MCAMP43121 646 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 G3BP1Q13283 466 aaKnown RBP eCLIP13.99□□□□□ -0.17
VPS28-214ENST00000531032 POLA2Q14181 598 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 TBC1D9Q6ZT07 1266 aa13.99□□□□□ -0.17
VPS28-214ENST00000531032 GRK4P32298 578 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 FCGRTP55899 365 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 ZKSCAN2Q63HK3 967 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 TMEM57Q8N5G2 664 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 RAET1EQ8TD07 263 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 OSBPL5Q9H0X9 879 aaPredicted RBP13.98□□□□□ -0.17
VPS28-214ENST00000531032 GPR108Q9NPR9 543 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 RAI14Q9P0K7 980 aa13.98□□□□□ -0.17
VPS28-214ENST00000531032 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.98□□□□□ -0.17
VPS28-214ENST00000531032 ATAD5Q96QE3 1844 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 LOC285556D6RIA3 1793 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 TRIM75PA6NK02 468 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 PRKCZQ05513 592 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 MTFR1Q15390 333 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 HABP4Q5JVS0 413 aaKnown RBP13.97□□□□□ -0.17
VPS28-214ENST00000531032 GADL1Q6ZQY3 521 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 SSH3Q8TE77 659 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 SHISA4Q96DD7 197 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.97□□□□□ -0.17
VPS28-214ENST00000531032 AGTPBP1Q9UPW5 1226 aa13.97□□□□□ -0.17
VPS28-214ENST00000531032 FAM196BA6NMK8 535 aa13.96□□□□□ -0.17
VPS28-214ENST00000531032 TNNI3KQ59H18 835 aa13.96□□□□□ -0.17
VPS28-214ENST00000531032 CCDC84Q86UT8 332 aaPredicted RBP13.96□□□□□ -0.17
VPS28-214ENST00000531032 LRP2BPQ9P2M1 347 aa13.96□□□□□ -0.17
VPS28-214ENST00000531032 FPGT-TNNI3KV9GXZ4 949 aa13.96□□□□□ -0.17
VPS28-214ENST00000531032 SIPA1L1O43166 1804 aa13.96□□□□□ -0.17
VPS28-214ENST00000531032 FOCADQ5VW36 1801 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 ATP8B2P98198 1209 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 TEX11Q8IYF3 940 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 PROCA1Q8NCQ7 364 aaPredicted RBP13.95□□□□□ -0.18
VPS28-214ENST00000531032 SLAIN1Q8ND83 568 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms