RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 LOC100289279A0A1B0GTE1 492 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 DEAF1O75398 565 aaPredicted RBP6.93□□□□□ -1.3
CD44-220ENST00000525688 CTSBP07858 339 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 CD68P34810 354 aaPredicted RBP6.93□□□□□ -1.3
CD44-220ENST00000525688 RAB33AQ14088 237 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 TNNI3KQ59H18 835 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 GIMAP6Q6P9H5 292 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 ANKS3Q6ZW76 656 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 ZC3H12CQ9C0D7 883 aaKnown RBP6.93□□□□□ -1.3
CD44-220ENST00000525688 PCDHB14Q9Y5E9 798 aa6.93□□□□□ -1.3
CD44-220ENST00000525688 ADAM11O75078 769 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 CANXP27824 592 aaKnown RBP6.92□□□□□ -1.3
CD44-220ENST00000525688 INPP5AQ14642 412 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 CCDC81Q6ZN84 652 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 GK5Q6ZS86 529 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 HDXQ7Z353 690 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 ANAPC16Q96DE5 110 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 ACSBG1Q96GR2 724 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 CRBNQ96SW2 442 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 ZSWIM4Q9H7M6 989 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 SIRPGQ9P1W8 387 aa6.92□□□□□ -1.3
CD44-220ENST00000525688 DLL1O00548 723 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 SMARCA5O60264 1052 aaPredicted RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 WFS1O76024 890 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 CDK8P49336 464 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 NLRP12P59046 1061 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 PDE3AQ14432 1141 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 NFE2L2Q16236 605 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 LRRFIP1Q32MZ4 808 aaKnown RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 FOXD4L6Q3SYB3 417 aaPredicted RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 ZC3H12AQ5D1E8 599 aaKnown RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 WIPI1Q5MNZ9 446 aaPredicted RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 LRFN4Q6PJG9 635 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 FOXD4L3Q6VB84 417 aaPredicted RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 CYFIP1Q7L576 1253 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 FBXO11Q86XK2 927 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 FAM177A1Q8N128 213 aaPredicted RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 WHAMMQ8TF30 809 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 WDR89Q96FK6 387 aaPredicted RBP6.91□□□□□ -1.3
CD44-220ENST00000525688 PLPPR2Q96GM1 343 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 PIF1Q9H611 641 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 PCDHGC5Q9Y5F6 944 aa6.91□□□□□ -1.3
CD44-220ENST00000525688 MEIS3P2A8K0S8 358 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 SMAD7O15105 426 aaKnown RBP6.9□□□□□ -1.3
CD44-220ENST00000525688 DDX3YO15523 660 aaKnown RBP6.9□□□□□ -1.3
CD44-220ENST00000525688 DLGAP3O95886 979 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 LIG1P18858 919 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 CASP7P55210 303 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 RING1Q06587 406 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 EXOSC6Q5RKV6 272 aaKnown RBP6.9□□□□□ -1.3
CD44-220ENST00000525688 TRAPPC3LQ5T215 181 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 LINC00114Q6XXX2 140 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 LRP10Q7Z4F1 713 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 LSRQ86X29 649 aaPredicted RBP6.9□□□□□ -1.3
CD44-220ENST00000525688 FAM169BQ8N8A8 192 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 WDR18Q9BV38 432 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 USP26Q9BXU7 913 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 ENAMQ9NRM1 1142 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 KCNK4Q9NYG8 393 aa6.9□□□□□ -1.3
CD44-220ENST00000525688 A0A0A0MRY4 1105 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 TLDC2A0PJX2 215 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 MEGF11A6BM72 1044 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 GRIN3BO60391 1043 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 AOC2O75106 756 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 HTR3BO95264 441 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 SLFN14P0C7P3 912 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 TMEM201Q5SNT2 666 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 ZNF385CQ66K41 422 aaPredicted RBP6.89□□□□□ -1.31
CD44-220ENST00000525688 ZNF746Q6NUN9 644 aaPredicted RBP6.89□□□□□ -1.31
CD44-220ENST00000525688 FMR1NBQ8N0W7 255 aaPredicted RBP6.89□□□□□ -1.31
CD44-220ENST00000525688 C19orf47Q8N9M1 422 aaKnown RBP6.89□□□□□ -1.31
CD44-220ENST00000525688 HNRNPLLQ8WVV9 542 aaKnown RBP6.89□□□□□ -1.31
CD44-220ENST00000525688 TRIM55Q9BYV6 548 aa6.89□□□□□ -1.31
CD44-220ENST00000525688 K7ELQ4 463 aaPredicted RBP6.88□□□□□ -1.31
CD44-220ENST00000525688 ERVK-24P63145 666 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 PDE4BQ07343 736 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 FBXW10Q5XX13 1052 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 ELMO3Q96BJ8 720 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 TRIM11Q96F44 468 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 TM9SF2Q99805 663 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 TMPRSS13Q9BYE2 586 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 ADAM30Q9UKF2 790 aa6.88□□□□□ -1.31
CD44-220ENST00000525688 R3HCC1Q9Y3T6 440 aaKnown RBP6.88□□□□□ -1.31
CD44-220ENST00000525688 U2SURPO15042 1029 aaKnown RBP6.87□□□□□ -1.31
CD44-220ENST00000525688 ARHGEF15O94989 841 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 RAC1P63000 192 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 TAB3Q8N5C8 712 aaPredicted RBP6.87□□□□□ -1.31
CD44-220ENST00000525688 NEDD1Q8NHV4 660 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 TMEM40Q8WWA1 233 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 ACTR10Q9NZ32 417 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 GMIPQ9P107 970 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 REV1Q9UBZ9 1251 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 TMA7Q9Y2S6 64 aaKnown RBP6.87□□□□□ -1.31
CD44-220ENST00000525688 MSRB2Q9Y3D2 182 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 TBX22Q9Y458 520 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 CORINQ9Y5Q5 1042 aa6.87□□□□□ -1.31
CD44-220ENST00000525688 SPDYE3A6NKU9 549 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 DCDC2CA8MYV0 355 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 PIK3R2O00459 728 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 FANCGO15287 622 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms