RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 STK36Q9NRP7 1315 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 DISP2A7MBM2 1401 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 SLIT2O94813 1529 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 NHSL1Q5SYE7 1610 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 IFIT3O14879 490 aaKnown RBP12.79□□□□□ -0.36
HDAC9-228ENST00000524023 CBX1P83916 185 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 SSRP1Q08945 709 aaKnown RBP12.79□□□□□ -0.36
HDAC9-228ENST00000524023 MAP3K12Q12852 859 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 RASGRF1Q13972 1273 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 ISM2Q6H9L7 571 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 CLIC6Q96NY7 704 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 HSD3B7Q9H2F3 369 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 SLC12A7Q9Y666 1083 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 TIAM2Q8IVF5 1701 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 UBE2Q2LH0YL09 131 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 CUTAO60888 179 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 FANCCQ00597 558 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 NAA30Q147X3 362 aaPredicted RBP12.79□□□□□ -0.36
HDAC9-228ENST00000524023 AKNAD1Q5T1N1 836 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 AK7Q96M32 723 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 SLC26A6Q9BXS9 759 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 CNNM2Q9H8M5 875 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 ARMT1Q9H993 441 aa12.79□□□□□ -0.36
HDAC9-228ENST00000524023 NID2Q14112 1375 aa12.78□□□□□ -0.36
HDAC9-228ENST00000524023 GSG1L2A8MUP6 293 aa12.78□□□□□ -0.36
HDAC9-228ENST00000524023 SNAP23O00161 211 aa12.78□□□□□ -0.36
HDAC9-228ENST00000524023 FMNL1O95466 1100 aaPredicted RBP12.78□□□□□ -0.36
HDAC9-228ENST00000524023 SFPQP23246 707 aaKnown RBP eCLIP12.78□□□□□ -0.36
HDAC9-228ENST00000524023 LMOD1P29536 600 aaPredicted RBP12.78□□□□□ -0.36
HDAC9-228ENST00000524023 PNOCQ13519 176 aa12.78□□□□□ -0.36
HDAC9-228ENST00000524023 DHX8Q14562 1220 aaKnown RBP12.78□□□□□ -0.36
HDAC9-228ENST00000524023 E4F1Q66K89 784 aaPredicted RBP12.78□□□□□ -0.36
HDAC9-228ENST00000524023 KRT23Q9C075 422 aa12.78□□□□□ -0.36
HDAC9-228ENST00000524023 KIF2AO00139 706 aaPredicted RBP12.77□□□□□ -0.36
HDAC9-228ENST00000524023 ATP1A3P13637 1013 aa12.77□□□□□ -0.36
HDAC9-228ENST00000524023 IFNAR1P17181 557 aa12.77□□□□□ -0.36
HDAC9-228ENST00000524023 MFSD6Q6ZSS7 791 aa12.77□□□□□ -0.36
HDAC9-228ENST00000524023 SYTL4Q96C24 671 aaPredicted RBP12.77□□□□□ -0.36
HDAC9-228ENST00000524023 ZNF335Q9H4Z2 1342 aaPredicted RBP12.77□□□□□ -0.37
HDAC9-228ENST00000524023 KCNJ6P48051 423 aa12.77□□□□□ -0.37
HDAC9-228ENST00000524023 METTL16Q86W50 562 aaKnown RBP12.77□□□□□ -0.37
HDAC9-228ENST00000524023 NOSTRINQ8IVI9 506 aa12.77□□□□□ -0.37
HDAC9-228ENST00000524023 KIF18AQ8NI77 898 aa12.77□□□□□ -0.37
HDAC9-228ENST00000524023 WASF1Q92558 559 aa12.77□□□□□ -0.37
HDAC9-228ENST00000524023 MPHOSPH8Q99549 860 aa12.77□□□□□ -0.37
HDAC9-228ENST00000524023 STRCQ7RTU9 1775 aa12.77□□□□□ -0.37
HDAC9-228ENST00000524023 BCORQ6W2J9 1755 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 PSDA5PKW4 1024 aaPredicted RBP12.76□□□□□ -0.37
HDAC9-228ENST00000524023 SPDYE4A6NLX3 237 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 PRKAB2O43741 272 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 GUCY1A2P33402 732 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 MYL5Q02045 173 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 LONRF3Q496Y0 759 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 SUSD4Q5VX71 490 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 KRBA2Q6ZNG9 492 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 STAG1Q8WVM7 1258 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 SEC31BQ9NQW1 1179 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 CGNQ9P2M7 1197 aaKnown RBP12.76□□□□□ -0.37
HDAC9-228ENST00000524023 KCNH3Q9ULD8 1083 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 BTBD18B2RXH4 712 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 MMP1P03956 469 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 GNAT2P19087 354 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 FOXP4Q8IVH2 680 aaPredicted RBP12.76□□□□□ -0.37
HDAC9-228ENST00000524023 LCORLQ8N3X6 602 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 KRI1Q8N9T8 703 aaKnown RBP12.76□□□□□ -0.37
HDAC9-228ENST00000524023 CNNM3Q8NE01 707 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 PPP1R13BQ96KQ4 1090 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 FEZ1Q99689 392 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 PRDM10Q9NQV6 1147 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 ZNF215Q9UL58 517 aaPredicted RBP12.76□□□□□ -0.37
HDAC9-228ENST00000524023 SLC4A4Q9Y6R1 1079 aa12.76□□□□□ -0.37
HDAC9-228ENST00000524023 PNPLA7Q6ZV29 1317 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 EXOC5O00471 708 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 NRDCO43847 1150 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 TDO2P48775 406 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 TOB1P50616 345 aaPredicted RBP12.75□□□□□ -0.37
HDAC9-228ENST00000524023 EIF5P55010 431 aaKnown RBP12.75□□□□□ -0.37
HDAC9-228ENST00000524023 UBASH3AP57075 661 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 WTAPQ15007 396 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 RTN1Q16799 776 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 RRP12Q5JTH9 1297 aaKnown RBP12.75□□□□□ -0.37
HDAC9-228ENST00000524023 OLFM4Q6UX06 510 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 ELOA2Q8IYF1 753 aaPredicted RBP12.75□□□□□ -0.37
HDAC9-228ENST00000524023 STK11IPQ8N1F8 1099 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 DPF2Q92785 391 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 NACAP1Q9BZK3 213 aa12.75□□□□□ -0.37
HDAC9-228ENST00000524023 CBFA2T2O43439 604 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 BCAMP50895 628 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 MDM2Q00987 491 aaPredicted RBP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 SART3Q15020 963 aaKnown RBP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 SAFBQ15424 915 aaKnown RBP eCLIP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 DIS3L2Q8IYB7 885 aaKnown RBP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 TRIM22Q8IYM9 498 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 ZKSCAN3Q9BRR0 538 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 TOMM22Q9NS69 142 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 KCNJ14Q9UNX9 436 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 PCDHA5Q9Y5H7 936 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 MYO1BO43795 1136 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 SERPINC1P01008 464 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 ZSCAN20P17040 1043 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms