RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 YY1AP1Q9H869 796 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 RBM8AQ9Y5S9 174 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 CROCC2H7BZ55 1655 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 PTPRCP08575 1304 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 RANBP1P43487 201 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 ARMC9Q7Z3E5 817 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 CCDC63Q8NA47 563 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 RHPN1Q8TCX5 695 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 MBIPQ9NS73 344 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 HMG20BQ9P0W2 317 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 PRDM15P57071 1507 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 PCYT1AP49585 367 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 ZNF131P52739 623 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 AMPD3Q01432 767 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 CCDC62Q6P9F0 684 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 HAUS1Q96CS2 278 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 CALML4Q96GE6 196 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 TRPM1Q7Z4N2 1603 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 GSTO1P78417 241 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 RUFY4Q6ZNE9 571 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 CTAGE1Q96RT6 745 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 TSC22D3Q99576 134 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 SH3GL3Q99963 347 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 BCL2L12Q9HB09 334 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 SLC24A3Q9HC58 644 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 ZFXP17010 805 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 PRPHP41219 470 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 IFIT5Q13325 482 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 TSC1Q92574 1164 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 EPSTI1Q96J88 318 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 RNF41Q9H4P4 317 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 Q9H521 79 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 TRMT112Q9UI30 125 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 EIF2AK4Q9P2K8 1649 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 NCKAP5LQ9HCH0 1330 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 PI4KAP2A4QPH2 592 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 STX17P56962 302 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 TNNC1P63316 161 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 SKOR1P84550 965 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 TRPC3Q13507 836 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 PSMD6Q15008 389 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 PI4KAP1Q8N8J0 262 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 CLASP1Q7Z460 1538 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 ADGRF5Q8IZF2 1346 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 A0A087WUV0 522 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 BAG3O95817 575 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 CHMP4BP1P59074 171 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 CETN1Q12798 172 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 ZNF444Q8N0Y2 327 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 NCOA7Q8NI08 942 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 ALG1Q9BT22 464 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 EIF2AQ9BY44 585 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 VAT1LQ9HCJ6 419 aa9.76□□□□□ -0.85
LIMCH1-218ENST00000513024 GOLGA6BA6NDN3 693 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 ANXA1P04083 346 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 SMARCC2Q8TAQ2 1214 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 JARID2Q92833 1246 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 DACT3Q96B18 629 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 RAB3IPQ96QF0 476 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 JPH2Q9BR39 696 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 MMRN2Q9H8L6 949 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 ARID5AQ03989 594 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 SPAG1Q07617 926 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 CFAP157Q5JU67 520 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 TPTE2Q6XPS3 522 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 WAPLQ7Z5K2 1190 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 CROCCP2Q86T23 111 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 ZCRB1Q8TBF4 217 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 DBF4Q9UBU7 674 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 SLC5A1P13866 664 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 PHEXP78562 749 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 ATP2A3Q93084 1043 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 NLRP3Q96P20 1036 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 DUOX2Q9NRD8 1548 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 AK2P54819 239 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 MAP3K21Q5TCX8 1036 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 ARMC2Q8NEN0 867 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 UBLCP1Q8WVY7 318 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 BCAP29Q9UHQ4 241 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 PAIP2BQ9ULR5 123 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 STK38LQ9Y2H1 464 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 TACC3Q9Y6A5 838 aa9.75□□□□□ -0.85
LIMCH1-218ENST00000513024 SPTLC2O15270 562 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 TRAPPC3LQ5T215 181 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 Q6ZUG5 572 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 RTL1A6NKG5 1358 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 E7EVH7 732 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 CCDC42Q96M95 316 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 EXOC1Q9NV70 894 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 MAP3K2Q9Y2U5 619 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 ZNF518AQ6AHZ1 1483 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 ZBTB24O43167 697 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 CA8P35219 290 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 FERMT1Q9BQL6 677 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 SAMD9LQ8IVG5 1584 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 ATP10AO60312 1499 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 ATP5J2-PTCD1G3V325 749 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 NDC80O14777 642 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 SLC4A8Q2Y0W8 1093 aa9.74□□□□□ -0.85
LIMCH1-218ENST00000513024 UBE3BQ7Z3V4 1068 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms