RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 FMR1Q06787 632 aaKnown RBP eCLIP19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 NR1I3Q14994 352 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 TAF7LQ5H9L4 462 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 XAGE3Q8WTP9 111 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 CLIC6Q96NY7 704 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 BRMS1Q9HCU9 246 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 LZTFL1Q9NQ48 299 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 GEMIN8Q9NWZ8 242 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 KCNH3Q9ULD8 1083 aa19.54■□□□□ 0.72
SQSTM1-211ENST00000506690 CASP8Q14790 479 aa19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 LRRC31Q6UY01 552 aa19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 LRRC59Q96AG4 307 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 KIF5CO60282 957 aa19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 MAN1B1Q9UKM7 699 aa19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 CCDC9Q9Y3X0 531 aaKnown RBP19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 JRKLQ9Y4A0 524 aa19.53■□□□□ 0.72
SQSTM1-211ENST00000506690 SPEF2Q9C093 1822 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 C5P01031 1676 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 AKR1B15C9JRZ8 316 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 ANTXR2P58335 489 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 VSNL1P62760 191 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 NT5DC1Q5TFE4 455 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 WWC2Q6AWC2 1192 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 RAD9BQ6WBX8 426 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 COPS6Q7L5N1 327 aa19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 NAA15Q9BXJ9 866 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 TEX13AQ9BXU3 409 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 AFDNP55196 1824 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-211ENST00000506690 FOXN1O15353 648 aa19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 FOXP2O15409 715 aa19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 UBE3BQ7Z3V4 1068 aa19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 PROSER2Q86WR7 435 aaPredicted RBP19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 MLKLQ8NB16 471 aa19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 ZBTB9Q96C00 473 aa19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 GBP3Q9H0R5 595 aa19.52■□□□□ 0.71
SQSTM1-211ENST00000506690 MAP3K15Q6ZN16 1313 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 A0A0U1RQJ8 604 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 A0A1B0GTH6 734 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 MYL6BP14649 208 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 GUCY2CP25092 1073 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 RAB11FIP4Q86YS3 637 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 NUTM2AQ8IVF1 878 aaPredicted RBP19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 ATRIPQ8WXE1 791 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 PPM1EQ8WY54 764 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 MED4Q9NPJ6 270 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 PHRF1Q9P1Y6 1649 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 ADAMTS7Q9UKP4 1686 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 TUBBP07437 444 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 IMMTQ16891 758 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 HSP90B2PQ58FF3 399 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 OSBP2Q969R2 916 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 NEUROD6Q96NK8 337 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 AIFM3Q96NN9 605 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 MED15Q96RN5 788 aa19.51■□□□□ 0.71
SQSTM1-211ENST00000506690 SARSP49591 514 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 KRT40Q6A162 431 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 RASGRP2Q7LDG7 609 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 ORAI2Q96SN7 254 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 ALG1Q9BT22 464 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 GPR108Q9NPR9 543 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 DACH1Q9UI36 760 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 CTAGE9A4FU28 777 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 HAND2P61296 217 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 ZNF569Q5MCW4 686 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 ANKRD13DQ6ZTN6 518 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 ATG9AQ7Z3C6 839 aa19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 HOOK1Q9UJC3 728 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-211ENST00000506690 WDR19Q8NEZ3 1342 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 MORC3Q14149 939 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 POSTNQ15063 836 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 KIF4BQ2VIQ3 1234 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 CCDC102AQ96A19 550 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 SAMSN1Q9NSI8 373 aaKnown RBP19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 RHOXF2BP0C7M4 288 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 TIMM10P62072 90 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 LRP10Q7Z4F1 713 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 TRMT44Q8IYL2 757 aaKnown RBP19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 RHOXF2Q9BQY4 288 aa19.49■□□□□ 0.71
SQSTM1-211ENST00000506690 CPDO75976 1380 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 LRRIQ3A6PVS8 624 aaPredicted RBP19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 CPP00450 1065 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 CASP7P55210 303 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 WHAMMP3Q1A5X7 153 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 APTXQ7Z2E3 356 aaKnown RBP19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 NCOA7Q8NI08 942 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 FAM204AQ9H8W3 233 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 LMTK3Q96Q04 1460 aa19.48■□□□□ 0.71
SQSTM1-211ENST00000506690 FGAP02671 866 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 TTC39AQ5SRH9 613 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 WDR93Q6P2C0 686 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 ACBD3Q9H3P7 528 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 ZMYM6O95789 1325 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 ECM29Q5VYK3 1845 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 CTAGE15A4D2H0 777 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 PPFIA4O75335 1185 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 IFIT1P09914 478 aaKnown RBP19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 CTAGE8P0CG41 777 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 PIP4K2BP78356 416 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 RBL2Q08999 1139 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 CTAGE6Q86UF2 777 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms