RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CCER1Q8TC90 406 aaPredicted RBP6.24□□□□□ -1.41
USP54-217ENST00000498213 MRPL18Q9H0U6 180 aaKnown RBP6.24□□□□□ -1.41
USP54-217ENST00000498213 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.23□□□□□ -1.41
USP54-217ENST00000498213 KRTAP4-8A0A0G2JLE6 195 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 FZD6O60353 706 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 TNFRSF21O75509 655 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 EDN3P14138 238 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 CEP120Q8N960 986 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 CAMKK2Q96RR4 588 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 GOLGA2P5Q9HBQ8 144 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 PCMTD2Q9NV79 361 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 CCDC87Q9NVE4 849 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 SALL4Q9UJQ4 1053 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 GPATCH8Q9UKJ3 1502 aaKnown RBP6.23□□□□□ -1.41
USP54-217ENST00000498213 NCOA3Q9Y6Q9 1424 aa6.23□□□□□ -1.41
USP54-217ENST00000498213 PLEKHH2Q8IVE3 1493 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 MROH1Q8NDA8 1641 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 PDE2AO00408 941 aaPredicted RBP6.22□□□□□ -1.41
USP54-217ENST00000498213 DLL1O00548 723 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 IDI1Q13907 227 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 NBPF8Q3BBV2 869 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 MCTP1Q6DN14 999 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 TMC1Q8TDI8 760 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 AKTIPQ9H8T0 292 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 FOXD3Q9UJU5 478 aaPredicted RBP6.22□□□□□ -1.41
USP54-217ENST00000498213 AMOTL2Q9Y2J4 779 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 MST1RQ04912 1400 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 GLI3P10071 1580 aa6.22□□□□□ -1.41
USP54-217ENST00000498213 FAM83GA6ND36 823 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 EREGO14944 169 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 TRIM37O94972 964 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 NEFLP07196 543 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 FSTP19883 344 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 SETDB1Q15047 1291 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 KRTAP19-1Q8IUB9 90 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 GJD3Q8N144 294 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 POP1Q99575 1024 aaKnown RBP6.21□□□□□ -1.42
USP54-217ENST00000498213 OSMRQ99650 979 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 CARD10Q9BWT7 1032 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 CHRDQ9H2X0 955 aa6.21□□□□□ -1.42
USP54-217ENST00000498213 SH2B1Q9NRF2 756 aaPredicted RBP6.21□□□□□ -1.42
USP54-217ENST00000498213 BRWD3Q6RI45 1802 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 CDC42BPAQ5VT25 1732 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 H3BRJ5 948 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 FSCN2O14926 492 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 ALX3O95076 343 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 ACPPP15309 386 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 GLB1P16278 677 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 EPHA1P21709 976 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 SSTR4P31391 388 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 CD68P34810 354 aaPredicted RBP6.2□□□□□ -1.42
USP54-217ENST00000498213 ARL4DP49703 201 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 PDE3BQ13370 1112 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 SLC51AQ86UW1 340 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 DZIP1LQ8IYY4 767 aaKnown RBP6.2□□□□□ -1.42
USP54-217ENST00000498213 KLHL23Q8NBE8 558 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 ASAP3Q8TDY4 903 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 SLC7A3Q8WY07 619 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 ORAI2Q96SN7 254 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 SYT17Q9BSW7 474 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 SEC31BQ9NQW1 1179 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 DZANK1Q9NVP4 752 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 TBX22Q9Y458 520 aa6.2□□□□□ -1.42
USP54-217ENST00000498213 CFAP65Q6ZU64 1925 aaKnown RBP6.19□□□□□ -1.42
USP54-217ENST00000498213 CASKIN1Q8WXD9 1431 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 TRPA1O75762 1119 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 ZBTB7AO95365 584 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 XPCQ01831 940 aaPredicted RBP6.19□□□□□ -1.42
USP54-217ENST00000498213 GPR162Q16538 588 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 ACAD11Q709F0 780 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 ADAM19Q9H013 955 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 BIN2Q9UBW5 565 aaPredicted RBP6.19□□□□□ -1.42
USP54-217ENST00000498213 EFCAB6Q5THR3 1501 aa6.19□□□□□ -1.42
USP54-217ENST00000498213 CCNB3Q8WWL7 1395 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 PIK3C2BO00750 1634 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 F8W735 103 aaPredicted RBP6.18□□□□□ -1.42
USP54-217ENST00000498213 VPS72Q15906 364 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 DUOXA2Q1HG44 320 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 TMEM130Q8N3G9 435 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 TMEM102Q8N9M5 508 aaPredicted RBP6.18□□□□□ -1.42
USP54-217ENST00000498213 GALNT11Q8NCW6 608 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 HHIPQ96QV1 700 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 ZKSCAN3Q9BRR0 538 aa6.18□□□□□ -1.42
USP54-217ENST00000498213 PDGFDQ9GZP0 370 aaPredicted RBP6.18□□□□□ -1.42
USP54-217ENST00000498213 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.18□□□□□ -1.42
USP54-217ENST00000498213 MBD5Q9P267 1494 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 POLR3DP05423 398 aaPredicted RBP6.17□□□□□ -1.42
USP54-217ENST00000498213 AGGF1Q8N302 714 aaeCLIP6.17□□□□□ -1.42
USP54-217ENST00000498213 ZNF526Q8TF50 670 aaPredicted RBP6.17□□□□□ -1.42
USP54-217ENST00000498213 BSNDQ8WZ55 320 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 WNT8BQ93098 351 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 CEP41Q9BYV8 373 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 ZFYVE28Q9HCC9 887 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 WWC3Q9ULE0 1092 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 PLEKHG1Q9ULL1 1385 aa6.17□□□□□ -1.42
USP54-217ENST00000498213 MYOM2P54296 1465 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 FYCO1Q9BQS8 1478 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 NFKBIEO00221 500 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 PAX4O43316 350 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 BRD1O95696 1058 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms