RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 UTP6Q9NYH9 597 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 HNRNPRO43390 633 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 TMCC1O94876 653 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 CCDC130P13994 396 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 PPP1R7Q15435 360 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 DZIP3Q86Y13 1208 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 ASZ1Q8WWH4 475 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 CCT7Q99832 543 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 SERPINA10Q9UK55 444 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 BMP15O95972 392 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 S100GP29377 79 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 GABPAQ06546 454 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 CDAN1Q8IWY9 1227 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 ARHGAP18Q8N392 663 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 NAP1L4Q99733 375 aaKnown RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 SCAND2PQ9GZW5 306 aaPredicted RBP6.49□□□□□ -1.37
USF3-204ENST00000496826 AMOTL2Q9Y2J4 779 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 EVI5O60447 810 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 MSR1P21757 451 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 JAK1P23458 1154 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 RIPK4P57078 832 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 KRT17Q04695 432 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 ABRQ12979 859 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 NFU1Q9UMS0 254 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 KRT13P13646 458 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 SNAP25P60880 206 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 PTK2BQ14289 1009 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 CCDC186Q7Z3E2 898 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 KRT78Q8N1N4 520 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 MTRQ99707 1265 aa6.49□□□□□ -1.37
USF3-204ENST00000496826 MTSS1O43312 755 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 PDZD4Q76G19 769 aaPredicted RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 TEX11Q8IYF3 940 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 FBXO18Q8NFZ0 1043 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 CCDC127Q96BQ5 260 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 UNKQ9C0B0 810 aaKnown RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 TRIM75PA6NK02 468 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 CASP14P31944 242 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 HSPA1LP34931 641 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 ANO4Q32M45 955 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 NUGGCQ68CJ6 796 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 CAPRIN2Q6IMN6 1127 aaKnown RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 PPP1R21Q6ZMI0 780 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 KRT74Q7RTS7 529 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 RMND1Q9NWS8 449 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 LZTS1Q9Y250 596 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 FCHSD2O94868 740 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 KRT6AP02538 564 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 KRT6BP04259 564 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 CCDC159P0C7I6 412 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 KRT6CP48668 564 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 NLRP7Q8WX94 980 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.48□□□□□ -1.37
USF3-204ENST00000496826 TMEM87BQ96K49 555 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 TRIM15Q9C019 465 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 APOEP02649 317 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 KPNA2P52292 529 aaKnown RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 PLEKHM3Q6ZWE6 761 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 UBE3BQ7Z3V4 1068 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 MRPL48Q96GC5 212 aaKnown RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 ARHGEF37A1IGU5 675 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 NUTM2FA1L443 756 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 TK2O00142 265 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 EBAG9O00559 213 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 ZNF75DP51815 510 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 RAB14P61106 215 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.48□□□□□ -1.37
USF3-204ENST00000496826 NUTM2GQ5VZR2 741 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 MPRIPQ6WCQ1 1025 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 HAUS1Q96CS2 278 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 NR1H4Q96RI1 486 aaPredicted RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 DDX19BQ9UMR2 479 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 PIK3CDO00329 1044 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 TADA3O75528 432 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 PCYT1AP49585 367 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 ZC3H18Q86VM9 953 aaKnown RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 RNF10Q8N5U6 811 aaKnown RBP6.48□□□□□ -1.37
USF3-204ENST00000496826 GCC1Q96CN9 775 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 FAM204AQ9H8W3 233 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 JADE2Q9NQC1 790 aa6.48□□□□□ -1.37
USF3-204ENST00000496826 TBKBP1A7MCY6 615 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 SLC9A1P19634 815 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 GOLGA8FQ08AF8 430 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 GOLGA8DPQ0D2H9 430 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 CFAP221Q4G0U5 840 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 CDC37L1Q7L3B6 337 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 BCAS4Q8TDM0 211 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 KIFAP3Q92845 792 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 PACSIN1Q9BY11 444 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 CLEC4MQ9H2X3 399 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 E7EVH7 732 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 APOA1P02647 267 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 U2AF1L5P0DN76 240 aaPredicted RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 ARHGDIAP52565 204 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 U2AF1Q01081 240 aaKnown RBP eCLIP6.47□□□□□ -1.37
USF3-204ENST00000496826 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.47□□□□□ -1.37
USF3-204ENST00000496826 SRRTQ9BXP5 876 aaKnown RBP6.47□□□□□ -1.37
USF3-204ENST00000496826 VPS16Q9H269 839 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 ECT2Q9H8V3 914 aa6.47□□□□□ -1.37
USF3-204ENST00000496826 FKBP14Q9NWM8 211 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms