RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 C9orf78Q9NZ63 289 aaPredicted RBP15.12■□□□□ 0.01
UPF3A-210ENST00000493727 PITPNM2Q9BZ72 1349 aa15.12■□□□□ 0.01
UPF3A-210ENST00000493727 FUT2Q10981 343 aa15.11■□□□□ 0.01
UPF3A-210ENST00000493727 GCKRQ14397 625 aa15.11■□□□□ 0.01
UPF3A-210ENST00000493727 ANGEL2Q5VTE6 544 aaKnown RBP15.11■□□□□ 0.01
UPF3A-210ENST00000493727 MINPP1Q9UNW1 487 aa15.11■□□□□ 0.01
UPF3A-210ENST00000493727 MMP14P50281 582 aa15.1■□□□□ 0.01
UPF3A-210ENST00000493727 SCARF1Q14162 830 aa15.1■□□□□ 0.01
UPF3A-210ENST00000493727 TJAP1Q5JTD0 557 aa15.1■□□□□ 0.01
UPF3A-210ENST00000493727 LEMD3Q9Y2U8 911 aa15.1■□□□□ 0.01
UPF3A-210ENST00000493727 PCDHB3Q9Y5E6 796 aa15.1■□□□□ 0.01
UPF3A-210ENST00000493727 MYO3BQ8WXR4 1341 aa15.1■□□□□ 0.01
UPF3A-210ENST00000493727 KDM4AO75164 1064 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 GNAI3P08754 354 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 USP17L8P0C7I0 530 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 UBTFL1P0CB47 393 aaPredicted RBP15.09■□□□□ 0.01
UPF3A-210ENST00000493727 PRPF38BQ5VTL8 546 aaKnown RBP15.09■□□□□ 0.01
UPF3A-210ENST00000493727 MPHOSPH8Q99549 860 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 MEIS3Q99687 375 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 ANKRD2Q9GZV1 360 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 COA1Q9GZY4 146 aa15.09■□□□□ 0.01
UPF3A-210ENST00000493727 GRM8O00222 908 aa15.08■□□□□ 0
UPF3A-210ENST00000493727 MOB2Q70IA6 237 aa15.08■□□□□ 0
UPF3A-210ENST00000493727 MTRQ99707 1265 aa15.08■□□□□ 0
UPF3A-210ENST00000493727 MYOZ2Q9NPC6 264 aa15.08■□□□□ 0
UPF3A-210ENST00000493727 LAMB1P07942 1786 aa15.08■□□□□ 0
UPF3A-210ENST00000493727 ZBTB7BO15156 539 aaPredicted RBP15.07■□□□□ 0
UPF3A-210ENST00000493727 CSF1RP07333 972 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 ITGA6P23229 1130 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 AAMPQ13685 434 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 STRIP1Q5VSL9 837 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 ERICH6BQ5W0A0 696 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 BLOC1S3Q6QNY0 202 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 OGFOD1Q8N543 542 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 HDAC5Q9UQL6 1122 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 GTF3C3Q9Y5Q9 886 aa15.07■□□□□ 0
UPF3A-210ENST00000493727 ANKRD18BA2A2Z9 1011 aa15.06■□□□□ 0
UPF3A-210ENST00000493727 GNAI2P04899 355 aa15.06■□□□□ 0
UPF3A-210ENST00000493727 CASP7P55210 303 aa15.06■□□□□ 0
UPF3A-210ENST00000493727 PKN2Q16513 984 aaKnown RBP15.06■□□□□ 0
UPF3A-210ENST00000493727 PUS10Q3MIT2 529 aaKnown RBP15.06■□□□□ 0
UPF3A-210ENST00000493727 NOM1Q5C9Z4 860 aaKnown RBP15.06■□□□□ 0
UPF3A-210ENST00000493727 ZNF296Q8WUU4 475 aaPredicted RBP15.06■□□□□ 0
UPF3A-210ENST00000493727 SPIRE2Q8WWL2 714 aa15.06■□□□□ 0
UPF3A-210ENST00000493727 C1orf115Q9H7X2 142 aa15.06■□□□□ 0
UPF3A-210ENST00000493727 SCAF8Q9UPN6 1271 aaKnown RBP15.06■□□□□ 0
UPF3A-210ENST00000493727 ZNF804BA4D1E1 1349 aa15.06■□□□□ 0
UPF3A-210ENST00000493727 KIAA0100Q14667 2235 aaKnown RBP15.05■□□□□ 0
UPF3A-210ENST00000493727 KCNJ4P48050 445 aa15.05■□□□□ -0
UPF3A-210ENST00000493727 USP46P62068 366 aa15.05■□□□□ -0
UPF3A-210ENST00000493727 MORN1Q5T089 497 aa15.05■□□□□ -0
UPF3A-210ENST00000493727 FAM117AQ9C073 453 aa15.05■□□□□ -0
UPF3A-210ENST00000493727 USP44Q9H0E7 712 aa15.05■□□□□ -0
UPF3A-210ENST00000493727 ZBTB40Q9NUA8 1239 aa15.05■□□□□ -0
UPF3A-210ENST00000493727 A0A1B0GUL6 1792 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 WTIPA6NIX2 430 aaPredicted RBP15.04■□□□□ -0
UPF3A-210ENST00000493727 NBPF7P0C2Y1 421 aaPredicted RBP15.04■□□□□ -0
UPF3A-210ENST00000493727 TM4SF4P48230 202 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 COPS2P61201 443 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 NBPF9Q3BBW0 867 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 DACT2Q5SW24 774 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 IL21Q9HBE4 155 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 HDAC9Q9UKV0 1011 aa15.04■□□□□ -0
UPF3A-210ENST00000493727 UBE2Q2LH0YL09 131 aa15.03■□□□□ -0
UPF3A-210ENST00000493727 TBC1D8O95759 1140 aa15.03■□□□□ -0
UPF3A-210ENST00000493727 IFIT5Q13325 482 aaKnown RBP15.03■□□□□ -0
UPF3A-210ENST00000493727 PRAMEF18Q5VWM3 479 aa15.03■□□□□ -0
UPF3A-210ENST00000493727 TTLL5Q6EMB2 1281 aa15.03■□□□□ -0
UPF3A-210ENST00000493727 CFHR5Q9BXR6 569 aa15.03■□□□□ -0
UPF3A-210ENST00000493727 LRRFIP2Q9Y608 721 aaKnown RBP15.03■□□□□ -0
UPF3A-210ENST00000493727 ECM29Q5VYK3 1845 aa15.03■□□□□ -0
UPF3A-210ENST00000493727 UTYO14607 1347 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 GPR25O00155 361 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 WNT10BO00744 389 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 HOXA2O43364 376 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 NF2P35240 595 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 CHRNDQ07001 517 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 ZNF516Q92618 1163 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 SUCLG2Q96I99 432 aa15.02■□□□□ -0
UPF3A-210ENST00000493727 RBBP6Q7Z6E9 1792 aaKnown RBP15.01□□□□□ -0.01
UPF3A-210ENST00000493727 C15orf52Q6ZUT6 534 aaKnown RBP15.01□□□□□ -0.01
UPF3A-210ENST00000493727 TXNRD3Q86VQ6 643 aa15.01□□□□□ -0.01
UPF3A-210ENST00000493727 MXD3Q9BW11 206 aa15.01□□□□□ -0.01
UPF3A-210ENST00000493727 TBC1D2Q9BYX2 928 aa15.01□□□□□ -0.01
UPF3A-210ENST00000493727 PPP4R2Q9NY27 417 aa15.01□□□□□ -0.01
UPF3A-210ENST00000493727 CHMP3Q9Y3E7 222 aa15.01□□□□□ -0.01
UPF3A-210ENST00000493727 FOXO4P98177 505 aa15□□□□□ -0.01
UPF3A-210ENST00000493727 CCDC57Q2TAC2 916 aa15□□□□□ -0.01
UPF3A-210ENST00000493727 FBXO46Q6PJ61 603 aaPredicted RBP15□□□□□ -0.01
UPF3A-210ENST00000493727 APOBEC3FQ8IUX4 373 aaKnown RBP15□□□□□ -0.01
UPF3A-210ENST00000493727 HLA-CQ95604 372 aa15□□□□□ -0.01
UPF3A-210ENST00000493727 CCDC136Q96JN2 1154 aa15□□□□□ -0.01
UPF3A-210ENST00000493727 CD209Q9NNX6 404 aa15□□□□□ -0.01
UPF3A-210ENST00000493727 GTF2IP78347 998 aa14.99□□□□□ -0.01
UPF3A-210ENST00000493727 KCNC4Q03721 635 aa14.99□□□□□ -0.01
UPF3A-210ENST00000493727 TAF7LQ5H9L4 462 aa14.99□□□□□ -0.01
UPF3A-210ENST00000493727 ZNF804AQ7Z570 1209 aa14.99□□□□□ -0.01
UPF3A-210ENST00000493727 SCUBE3Q8IX30 993 aa14.99□□□□□ -0.01
UPF3A-210ENST00000493727 DDRGK1Q96HY6 314 aa14.99□□□□□ -0.01
UPF3A-210ENST00000493727 ZBED3Q96IU2 234 aaPredicted RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms