RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 CA12O43570 354 aa21.04■□□□□ 0.96
MDC1-206ENST00000489540 SPRYD7Q5W111 196 aa21.04■□□□□ 0.96
MDC1-206ENST00000489540 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.04■□□□□ 0.96
MDC1-206ENST00000489540 EDC3Q96F86 508 aaKnown RBP21.04■□□□□ 0.96
MDC1-206ENST00000489540 CSRNP1Q96S65 589 aa21.04■□□□□ 0.96
MDC1-206ENST00000489540 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.04■□□□□ 0.962e-6■■□□□ 14
MDC1-206ENST00000489540 CSADQ9Y600 493 aa21.04■□□□□ 0.96
MDC1-206ENST00000489540 TTC41PQ6P2S7 1318 aa21.03■□□□□ 0.96
MDC1-206ENST00000489540 MYH2Q9UKX2 1941 aa21.03■□□□□ 0.96
MDC1-206ENST00000489540 ERC2O15083 957 aa21.03■□□□□ 0.96
MDC1-206ENST00000489540 ZBTB48P10074 688 aaPredicted RBP21.03■□□□□ 0.96
MDC1-206ENST00000489540 PDE6AP16499 860 aa21.03■□□□□ 0.96
MDC1-206ENST00000489540 SH3BP5LQ7L8J4 393 aa21.03■□□□□ 0.96
MDC1-206ENST00000489540 WRNIP1Q96S55 665 aa21.03■□□□□ 0.96
MDC1-206ENST00000489540 DDTLA6NHG4 134 aaPredicted RBP21.02■□□□□ 0.96
MDC1-206ENST00000489540 CTCFP49711 727 aaPredicted RBP21.02■□□□□ 0.96
MDC1-206ENST00000489540 SMC5Q8IY18 1101 aa21.02■□□□□ 0.96
MDC1-206ENST00000489540 MIGA1Q8NAN2 632 aa21.02■□□□□ 0.96
MDC1-206ENST00000489540 OSBPL5Q9H0X9 879 aaPredicted RBP21.02■□□□□ 0.96
MDC1-206ENST00000489540 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.02■□□□□ 0.96
MDC1-206ENST00000489540 ZNF112Q9UJU3 913 aa21.02■□□□□ 0.96
MDC1-206ENST00000489540 FOXN1O15353 648 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 IGHDP01880 384 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 DYNLL1P63167 89 aaKnown RBP21.01■□□□□ 0.95
MDC1-206ENST00000489540 MAP3K10Q02779 954 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 VGLL4Q14135 290 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 ZSCAN25Q6NSZ9 544 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 TGFBRAP1Q8WUH2 860 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 WNK4Q96J92 1243 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 ATRNL1Q5VV63 1379 aa21.01■□□□□ 0.95
MDC1-206ENST00000489540 TBC1D12O60347 775 aa21■□□□□ 0.95
MDC1-206ENST00000489540 GLRX3O76003 335 aaKnown RBP21■□□□□ 0.95
MDC1-206ENST00000489540 INHBEP58166 350 aa21■□□□□ 0.95
MDC1-206ENST00000489540 IRX6P78412 446 aaPredicted RBP21■□□□□ 0.95
MDC1-206ENST00000489540 MKRN3Q13064 507 aaKnown RBP21■□□□□ 0.95
MDC1-206ENST00000489540 DHX36Q9H2U1 1008 aaKnown RBP21■□□□□ 0.95
MDC1-206ENST00000489540 ELP3Q9H9T3 547 aa21■□□□□ 0.95
MDC1-206ENST00000489540 ZNF532Q9HCE3 1301 aa21■□□□□ 0.95
MDC1-206ENST00000489540 MAGEB6P1A0A0J9YX57 407 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 TCRBV5S4A2TA0A5A2 114 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 MX1P20591 662 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 ADD2P35612 726 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 TM4SF4P48230 202 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 SREBF2Q12772 1141 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 TSHZ3Q63HK5 1081 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 THSD7BQ9C0I4 1608 aa20.99■□□□□ 0.95
MDC1-206ENST00000489540 MANSC4A6NHS7 340 aaPredicted RBP20.98■□□□□ 0.95
MDC1-206ENST00000489540 UBE3CQ15386 1083 aa20.98■□□□□ 0.95
MDC1-206ENST00000489540 ERO1BQ86YB8 467 aa20.98■□□□□ 0.95
MDC1-206ENST00000489540 MAPKAPK5Q8IW41 473 aa20.98■□□□□ 0.95
MDC1-206ENST00000489540 OTUD7AQ8TE49 926 aaPredicted RBP20.98■□□□□ 0.95
MDC1-206ENST00000489540 ZKSCAN4Q969J2 545 aaPredicted RBP20.98■□□□□ 0.95
MDC1-206ENST00000489540 OPTNQ96CV9 577 aa20.98■□□□□ 0.95
MDC1-206ENST00000489540 RIOK1Q9BRS2 568 aaKnown RBP20.98■□□□□ 0.95
MDC1-206ENST00000489540 COL2A1P02458 1487 aaPredicted RBP20.98■□□□□ 0.95
MDC1-206ENST00000489540 FLT1P17948 1338 aa20.97■□□□□ 0.95
MDC1-206ENST00000489540 USP5P45974 858 aa20.97■□□□□ 0.95
MDC1-206ENST00000489540 SAGE1Q9NXZ1 904 aa20.97■□□□□ 0.95
MDC1-206ENST00000489540 PI4KBQ9UBF8 816 aa20.97■□□□□ 0.95
MDC1-206ENST00000489540 SNCAIPQ9Y6H5 919 aa20.97■□□□□ 0.95
MDC1-206ENST00000489540 SPDYE5A6NIY4 337 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 PHF20L1A8MW92 1017 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 INPP5BP32019 993 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 LRRFIP1Q32MZ4 808 aaKnown RBP20.96■□□□□ 0.95
MDC1-206ENST00000489540 NOL9Q5SY16 702 aaKnown RBP20.96■□□□□ 0.95
MDC1-206ENST00000489540 FOXP4Q8IVH2 680 aaPredicted RBP20.96■□□□□ 0.95
MDC1-206ENST00000489540 KBTBD3Q8NAB2 608 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 PI4K2BQ8TCG2 481 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 RNF186Q9NXI6 227 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 STAP2Q9UGK3 403 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 SALL3Q9BXA9 1300 aa20.96■□□□□ 0.95
MDC1-206ENST00000489540 GJA5P36382 358 aa20.95■□□□□ 0.95
MDC1-206ENST00000489540 B4GALNT3Q6L9W6 998 aa20.95■□□□□ 0.95
MDC1-206ENST00000489540 CRNKL1Q9BZJ0 848 aaKnown RBP20.95■□□□□ 0.95
MDC1-206ENST00000489540 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.95■□□□□ 0.95
MDC1-206ENST00000489540 PRDM10Q9NQV6 1147 aa20.95■□□□□ 0.95
MDC1-206ENST00000489540 HERC5Q9UII4 1024 aaKnown RBP20.95■□□□□ 0.95
MDC1-206ENST00000489540 PCNTO95613 3336 aa20.95■□□□□ 0.94
MDC1-206ENST00000489540 HSPA8P11142 646 aaKnown RBP20.95■□□□□ 0.94
MDC1-206ENST00000489540 NUCB1Q02818 461 aa20.95■□□□□ 0.94
MDC1-206ENST00000489540 CHD1LQ86WJ1 897 aa20.95■□□□□ 0.94
MDC1-206ENST00000489540 LNPKQ9C0E8 428 aa20.95■□□□□ 0.94
MDC1-206ENST00000489540 MAST2Q6P0Q8 1798 aa20.95■□□□□ 0.94
MDC1-206ENST00000489540 CTNND1O60716 968 aaKnown RBP20.94■□□□□ 0.94
MDC1-206ENST00000489540 TRPA1O75762 1119 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 HLA-DOAP06340 250 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 ZFYP08048 801 aaPredicted RBP20.94■□□□□ 0.94
MDC1-206ENST00000489540 GTF2A2P52657 109 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 LBX1P52954 281 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 PDE1AP54750 535 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 PPATQ06203 517 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 CNKSR2Q8WXI2 1034 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 OTUD5Q96G74 571 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 PALD1Q9ULE6 856 aa20.94■□□□□ 0.94
MDC1-206ENST00000489540 ALDH1A1P00352 501 aa20.93■□□□□ 0.94
MDC1-206ENST00000489540 PPIL2Q13356 520 aa20.93■□□□□ 0.94
MDC1-206ENST00000489540 PICK1Q9NRD5 415 aa20.93■□□□□ 0.94
MDC1-206ENST00000489540 SAP30BPQ9UHR5 308 aaKnown RBP20.93■□□□□ 0.94
MDC1-206ENST00000489540 TESPA1A2RU30 521 aaPredicted RBP20.92■□□□□ 0.94
MDC1-206ENST00000489540 RNF113AO15541 343 aaKnown RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms