RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	PDHX	O00330	501 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	CT47B1	P0C2W7	299 aa	Predicted RBP	13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	SLC5A1	P13866	664 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	RARS	P54136	660 aa	Known RBP	13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	UBXN2A	P68543	259 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	U2AF1L4	Q8WU68	220 aa	Known RBP	13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	LPIN2	Q92539	896 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	TEKT1	Q969V4	418 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	API5	Q9BZZ5	524 aa	Known RBP	13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	UNC93B1	Q9H1C4	597 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	STAP2	Q9UGK3	403 aa		13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	LRRFIP2	Q9Y608	721 aa	Known RBP	13.18	□□□□□ -0.3
HMGN1-215	ENST00000485550	ADGRA2	Q96PE1	1338 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	EVI5	O60447	810 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	INPP5B	P32019	993 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	PRKCZ	Q05513	592 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	MIGA2	Q7L4E1	593 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	MEIS3	Q99687	375 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	CEP126	Q9P2H0	1117 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550	GABRQ	Q9UN88	632 aa		13.17	□□□□□ -0.3
HMGN1-215	ENST00000485550		A0A1W2PPC1	479 aa		13.16	□□□□□ -0.3
HMGN1-215	ENST00000485550	HDLBP	Q00341	1268 aa	Known RBP	13.16	□□□□□ -0.3
HMGN1-215	ENST00000485550	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.16	□□□□□ -0.3
HMGN1-215	ENST00000485550	ANKRD23	Q86SG2	305 aa		13.16	□□□□□ -0.3
HMGN1-215	ENST00000485550	DCBLD2	Q96PD2	775 aa		13.16	□□□□□ -0.3
HMGN1-215	ENST00000485550	TMOD2	Q9NZR1	351 aa		13.16	□□□□□ -0.3
HMGN1-215	ENST00000485550	GALR2	O43603	387 aa	Predicted RBP	13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	SGPL1	O95470	568 aa		13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	PPAT	Q06203	517 aa		13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	ATP2B3	Q16720	1220 aa		13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	ZDHHC15	Q96MV8	337 aa		13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	TNN	Q9UQP3	1299 aa		13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	DOCK2	Q92608	1830 aa		13.15	□□□□□ -0.3
HMGN1-215	ENST00000485550	CIAO1	O76071	339 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	TFRC	P02786	760 aa	Known RBP	13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	CYP2C8	P10632	490 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	IL15	P40933	162 aa	Predicted RBP	13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	PHKA1	P46020	1223 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	FCGRT	P55899	365 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	DIXDC1	Q155Q3	683 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	DCAF15	Q66K64	600 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550		Q7L0L9	218 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	SLAIN1	Q8ND83	568 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	WDR66	Q8TBY9	1149 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	FRAT1	Q92837	279 aa	Predicted RBP	13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	MRI	Q9BWK5	157 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	ZNF341	Q9BYN7	854 aa		13.14	□□□□□ -0.31
HMGN1-215	ENST00000485550	MAST3	O60307	1309 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	KIF16B	Q96L93	1317 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	PHIP	Q8WWQ0	1821 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	ADCY3	O60266	1144 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	BCAR3	O75815	825 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	BCR	P11274	1271 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	ELN	P15502	786 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	PRDX5	P30044	214 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	ADORA1	P30542	326 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	TIMM10	P62072	90 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	MOGS	Q13724	837 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	HHIPL2	Q6UWX4	724 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	FAM83A	Q86UY5	434 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	CLUAP1	Q96AJ1	413 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	HOOK2	Q96ED9	719 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	DEFB118	Q96PH6	123 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	PHF12	Q96QT6	1004 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	GNL3L	Q9NVN8	582 aa	Known RBP	13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	FBXO3	Q9UK99	471 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	KCNH4	Q9UQ05	1017 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	HDAC5	Q9UQL6	1122 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	SUGT1	Q9Y2Z0	365 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	MYH2	Q9UKX2	1941 aa		13.13	□□□□□ -0.31
HMGN1-215	ENST00000485550	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	INHA	P05111	366 aa		13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	TCP10	Q12799	353 aa		13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	DEFB123	Q8N688	67 aa		13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	ARHGAP45	Q92619	1136 aa		13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	PAWR	Q96IZ0	340 aa	Known RBP	13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	PARK7	Q99497	189 aa	Known RBP	13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	COPRS	Q9NQ92	184 aa		13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	DAGLA	Q9Y4D2	1042 aa		13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	DDX60L	Q5H9U9	1706 aa	Known RBP	13.12	□□□□□ -0.31
HMGN1-215	ENST00000485550	SRGAP3	O43295	1099 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	LDHB	P07195	334 aa	Known RBP	13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	GNAI3	P08754	354 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	FLT3LG	P49771	235 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	TFCP2	Q12800	502 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	CCDC102B	Q68D86	513 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	CDC42EP5	Q6NZY7	148 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	C7orf61	Q8IZ16	206 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	DIS3L	Q8TF46	1054 aa	Known RBP	13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	USP40	Q9NVE5	1235 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	TAOK2	Q9UL54	1235 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	DENND2A	Q9ULE3	1009 aa		13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.11	□□□□□ -0.31
HMGN1-215	ENST00000485550	DOCK1	Q14185	1865 aa		13.1	□□□□□ -0.31
HMGN1-215	ENST00000485550	UNC80	Q8N2C7	3258 aa		13.1	□□□□□ -0.31
HMGN1-215	ENST00000485550	IPO8	O15397	1037 aa	Known RBP	13.1	□□□□□ -0.31
HMGN1-215	ENST00000485550	TRIM27	P14373	513 aa		13.1	□□□□□ -0.31
HMGN1-215	ENST00000485550	NFIA	Q12857	509 aa		13.1	□□□□□ -0.31
HMGN1-215	ENST00000485550	FKBP1C	Q5VVH2	108 aa		13.1	□□□□□ -0.31
HMGN1-215	ENST00000485550	GPAT2	Q6NUI2	795 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms