RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 FBXL16Q8N461 479 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 CCDC82Q8N4S0 544 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 LLPHQ9BRT6 129 aaKnown RBP16.9■□□□□ 0.3
CHD3-211ENST00000481999 UFL1O94874 794 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 BAG6P46379 1132 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 KRT85P78386 507 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 ST5P78524 1137 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 NFXL1Q6ZNB6 911 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 NACAP1Q9BZK3 213 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 IFIT3O14879 490 aaKnown RBP16.89■□□□□ 0.29
CHD3-211ENST00000481999 PTMAP06454 111 aaKnown RBP16.89■□□□□ 0.29
CHD3-211ENST00000481999 CYP2D6P10635 497 aa16.89■□□□□ 0.29
CHD3-211ENST00000481999 CPLX1O14810 134 aa16.88■□□□□ 0.29
CHD3-211ENST00000481999 PLSCR1O15162 318 aa16.88■□□□□ 0.29
CHD3-211ENST00000481999 EZH2Q15910 746 aaKnown RBP16.88■□□□□ 0.29
CHD3-211ENST00000481999 ORC3Q9UBD5 711 aaPredicted RBP16.88■□□□□ 0.29
CHD3-211ENST00000481999 POLLQ9UGP5 575 aa16.88■□□□□ 0.29
CHD3-211ENST00000481999 LIG1P18858 919 aa16.88■□□□□ 0.29
CHD3-211ENST00000481999 METAP2P50579 478 aaKnown RBP eCLIP16.88■□□□□ 0.29
CHD3-211ENST00000481999 CAMKK2Q96RR4 588 aa16.88■□□□□ 0.29
CHD3-211ENST00000481999 XDHP47989 1333 aa16.88■□□□□ 0.29
CHD3-211ENST00000481999 MYH2Q9UKX2 1941 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 USP17L12C9JPN9 530 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 USP17L21D6R901 530 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 POLR3DP05423 398 aaPredicted RBP16.87■□□□□ 0.29
CHD3-211ENST00000481999 LEO1Q8WVC0 666 aaPredicted RBP16.87■□□□□ 0.29
CHD3-211ENST00000481999 SPATA32Q96LK8 384 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 FAM217BQ9NTX9 383 aaPredicted RBP16.87■□□□□ 0.29
CHD3-211ENST00000481999 GNAT2P19087 354 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 HMGN5P82970 282 aaKnown RBP16.87■□□□□ 0.29
CHD3-211ENST00000481999 GIMAP6Q6P9H5 292 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 STAG1Q8WVM7 1258 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 PGBD1Q96JS3 809 aa16.87■□□□□ 0.29
CHD3-211ENST00000481999 ZMYM6O95789 1325 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.86■□□□□ 0.29
CHD3-211ENST00000481999 RANBP6O60518 1105 aaKnown RBP16.86■□□□□ 0.29
CHD3-211ENST00000481999 NMT2O60551 498 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 CAMK4Q16566 473 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 CHMP4CQ96CF2 233 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 CTR9Q6PD62 1173 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 DZIP1Q86YF9 867 aaKnown RBP16.86■□□□□ 0.29
CHD3-211ENST00000481999 AKT1S1Q96B36 256 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 USP28Q96RU2 1077 aa16.86■□□□□ 0.29
CHD3-211ENST00000481999 ELP1O95163 1332 aa16.85■□□□□ 0.29
CHD3-211ENST00000481999 KIF28PB7ZC32 967 aa16.85■□□□□ 0.29
CHD3-211ENST00000481999 SOCS7O14512 581 aa16.85■□□□□ 0.29
CHD3-211ENST00000481999 RIMBP2O15034 1052 aa16.85■□□□□ 0.29
CHD3-211ENST00000481999 ZBTB43O43298 467 aa16.85■□□□□ 0.29
CHD3-211ENST00000481999 FUCA2Q9BTY2 467 aa16.85■□□□□ 0.29
CHD3-211ENST00000481999 DCP1AQ9NPI6 582 aaPredicted RBP16.85■□□□□ 0.29
CHD3-211ENST00000481999 MMP10P09238 476 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 GUCY1A2P33402 732 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 TDRD7Q8NHU6 1098 aaKnown RBP16.84■□□□□ 0.29
CHD3-211ENST00000481999 NUP133Q8WUM0 1156 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 C8orf76Q96K31 380 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 USP25Q9UHP3 1055 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 SLC12A7Q9Y666 1083 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 BAZ2BQ9UIF8 2168 aaKnown RBP16.84■□□□□ 0.29
CHD3-211ENST00000481999 GOLGA8AA7E2F4 631 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 C6orf229H3BNL8 230 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 SEMA3EO15041 775 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 RRP9O43818 475 aaKnown RBP16.84■□□□□ 0.29
CHD3-211ENST00000481999 USP17L8P0C7I0 530 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 TMEM87BQ96K49 555 aa16.84■□□□□ 0.29
CHD3-211ENST00000481999 TIAM2Q8IVF5 1701 aa16.83■□□□□ 0.29
CHD3-211ENST00000481999 WDR19Q8NEZ3 1342 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 NTRK3Q16288 839 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 FAM47AQ5JRC9 791 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 RBM17Q96I25 401 aaKnown RBP16.83■□□□□ 0.28
CHD3-211ENST00000481999 CD209Q9NNX6 404 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 LEMD3Q9Y2U8 911 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 ANKRD31Q8N7Z5 1873 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 RGPD3A6NKT7 1758 aaPredicted RBP16.83■□□□□ 0.28
CHD3-211ENST00000481999 RGPD4Q7Z3J3 1758 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 CCDC69A6NI79 296 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 SGMS1Q86VZ5 419 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 TBC1D16Q8TBP0 767 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 SH3RF3Q8TEJ3 882 aaPredicted RBP16.83■□□□□ 0.28
CHD3-211ENST00000481999 KRT23Q9C075 422 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 SCAND2PQ9GZW5 306 aaPredicted RBP16.83■□□□□ 0.28
CHD3-211ENST00000481999 GGA1Q9UJY5 639 aa16.83■□□□□ 0.28
CHD3-211ENST00000481999 TNKSO95271 1327 aa16.82■□□□□ 0.28
CHD3-211ENST00000481999 hCG_1642624A0A1W2PR95 340 aa16.82■□□□□ 0.28
CHD3-211ENST00000481999 ADCY5O95622 1261 aa16.82■□□□□ 0.28
CHD3-211ENST00000481999 LDHBP07195 334 aaKnown RBP16.82■□□□□ 0.28
CHD3-211ENST00000481999 KIAA2012Q0VF49 1180 aa16.82■□□□□ 0.28
CHD3-211ENST00000481999 MXD3Q9BW11 206 aa16.82■□□□□ 0.28
CHD3-211ENST00000481999 PDGFDQ9GZP0 370 aaPredicted RBP16.82■□□□□ 0.28
CHD3-211ENST00000481999 CNNM2Q9H8M5 875 aa16.82■□□□□ 0.28
CHD3-211ENST00000481999 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.82■□□□□ 0.28
CHD3-211ENST00000481999 NR1I2O75469 434 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 WTAPQ15007 396 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 FBXO18Q8NFZ0 1043 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 DACT1Q9NYF0 836 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 ZNF804AQ7Z570 1209 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 DYNLL2Q96FJ2 89 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 SLC26A6Q9BXS9 759 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 MCM9Q9NXL9 1143 aa16.81■□□□□ 0.28
CHD3-211ENST00000481999 ZNF219Q9P2Y4 722 aaPredicted RBP16.81■□□□□ 0.28
CHD3-211ENST00000481999 R3HCC1Q9Y3T6 440 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms