RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RALBP1Q15311 655 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 ARTNQ5T4W7 220 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 ZNF496Q96IT1 587 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 ZIC5Q96T25 663 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 TEX13AQ9BXU3 409 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 NIFKQ9BYG3 293 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 SRP68Q9UHB9 627 aaKnown RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 IQSEC3Q9UPP2 1182 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 DOLKQ9UPQ8 538 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 ZBTB1Q9Y2K1 713 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 PXDNLA1KZ92 1463 aa9.01□□□□□ -0.97
CCDC88A-213ENST00000476903 EFSO43281 561 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 HTATSF1O43719 755 aaKnown RBP9□□□□□ -0.97
CCDC88A-213ENST00000476903 TGFB2P61812 414 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 USPL1Q5W0Q7 1092 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 MCM10Q7L590 875 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 AIDAQ96BJ3 306 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 FMNL2Q96PY5 1086 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 PNNQ9H307 717 aaKnown RBP9□□□□□ -0.97
CCDC88A-213ENST00000476903 SNRKQ9NRH2 765 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 ARFGEF1Q9Y6D6 1849 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 SCN7AQ01118 1682 aa9□□□□□ -0.97
CCDC88A-213ENST00000476903 A0A087WZG4 1122 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 CANXP27824 592 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 SMTNP53814 917 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 GDF10P55107 478 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 DDX10Q13206 875 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 NARFQ9UHQ1 456 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 USP3Q9Y6I4 520 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 NRXN2Q9P2S2 1712 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 LAMB4A4D0S4 1761 aa8.99□□□□□ -0.97
CCDC88A-213ENST00000476903 ELOA3CA0A087WX78 387 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 A0A0G2JLW4 131 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 ELOA3DA6NLF2 546 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 POLRMTO00411 1230 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 TM4SF1P30408 202 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 EIF5P55010 431 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 DDR1Q08345 913 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 ELOA3BQ3SY89 546 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 SAMD5Q5TGI4 173 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 ELOA3Q8NG57 546 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 PLEKHF1Q96S99 279 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 KRTAP9-9Q9BYP9 154 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 KRTAP9-4Q9BYQ2 154 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 ZFP64Q9NPA5 681 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 WWC3Q9ULE0 1092 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 BCORQ6W2J9 1755 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 KDM3BQ7LBC6 1761 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 MAPK8IP3Q9UPT6 1336 aa8.98□□□□□ -0.97
CCDC88A-213ENST00000476903 DLEC1Q9Y238 1755 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 SCO2A0A1W2PP80 73 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 KCNQ3O43525 872 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 DPEP1P16444 411 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 IL6STP40189 918 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 DCTN1Q14203 1278 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 NFIXQ14938 502 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 MTFR1Q15390 333 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 ARSJQ5FYB0 599 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 NPM2Q86SE8 214 aaKnown RBP8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 ZDHHC3Q9NYG2 299 aa8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 MYBBP1AQ9BQG0 1328 aaKnown RBP8.97□□□□□ -0.97
CCDC88A-213ENST00000476903 SNRPA1P09661 255 aaKnown RBP8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 TAF7Q15545 349 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 NFE2L2Q16236 605 aa8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 PNISRQ8TF01 805 aaKnown RBP8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 MARK1Q9P0L2 795 aa8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 BCS1LQ9Y276 419 aa8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 STARD13Q9Y3M8 1113 aa8.96□□□□□ -0.98
CCDC88A-213ENST00000476903 TMEM229AB2RXF0 380 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 A1BGP04217 495 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 LAMC2Q13753 1193 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 OXLD1Q5BKU9 147 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 PRSS36Q5K4E3 855 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 KRTAP19-1Q8IUB9 90 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 PRDM6Q9NQX0 595 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 PIM2Q9P1W9 311 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 PRR12Q9ULL5 1215 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 USP16Q9Y5T5 823 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 ADCY9O60503 1353 aa8.95□□□□□ -0.98
CCDC88A-213ENST00000476903 ANKRD31Q8N7Z5 1873 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 ADARB2-AS1A8MUL3 147 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 FAM229AH3BQW9 127 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 CDK2AP1O14519 115 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 SERPINB2P05120 415 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 KCNA3P22001 575 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 IRF5Q13568 498 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 BICDL1Q6ZP65 573 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 TBC1D2BQ9UPU7 963 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 CARMIL3Q8ND23 1372 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 ATP10DQ9P241 1426 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 SBF1O95248 1867 aa8.94□□□□□ -0.98
CCDC88A-213ENST00000476903 PRAMEF22A3QJZ6 481 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 CAMTA2O94983 1202 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 CHRNA5P30532 468 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 ZEB1P37275 1124 aaPredicted RBP8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 LMOD3Q0VAK6 560 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 SLFNL1Q499Z3 407 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 DALRD3Q5D0E6 543 aaKnown RBP8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 TBC1D9BQ66K14 1250 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 ARHGAP27Q6ZUM4 889 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms