RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 DDTLA6NHG4 134 aaPredicted RBP15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 CXCL11O14625 94 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 CTGFP29279 349 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 MECOMQ03112 1051 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ARHGEF6Q15052 776 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 GPAT2Q6NUI2 795 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 SLF2Q8IX21 1173 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ARHGAP39Q9C0H5 1083 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 ABCF2Q9UG63 623 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 PTCH2Q9Y6C5 1203 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 MROH7-TTC4A0A0A0MT08 1334 aa15.16■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 GNRH1P01148 92 aa15.15■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 TMEM57Q8N5G2 664 aa15.15■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 SSH3Q8TE77 659 aa15.15■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 CLUAP1Q96AJ1 413 aa15.15■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 NSUN4Q96CB9 384 aaKnown RBP15.15■□□□□ 0.02
MSH5-SAPCD1-205ENST00000476085 PDHXO00330 501 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 TBC1D12O60347 775 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 MAP4K4O95819 1239 aaPredicted RBP15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SLURP2P0DP57 97 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PTPRAP18433 802 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 MCAMP43121 646 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 BTDP43251 543 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PI16Q6UXB8 463 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ERICH6Q7L0X2 663 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 DZIP1Q86YF9 867 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SPATA5Q8NB90 893 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 FRAT1Q92837 279 aaPredicted RBP15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 NEUROD6Q96NK8 337 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 GPR108Q9NPR9 543 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 AFG3L2Q9Y4W6 797 aa15.14■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 A0A0G2JLL6 359 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 CTNND1O60716 968 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 BCRP11274 1271 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 EN2P19622 333 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ATP8B2P98198 1209 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 G3BP1Q13283 466 aaKnown RBP eCLIP15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 DOCK1Q14185 1865 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ZKSCAN2Q63HK3 967 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 TBC1D9Q6ZT07 1266 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PRRT2Q7Z6L0 340 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 DOCK3Q8IZD9 2030 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SCYL3Q8IZE3 742 aa15.13■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 MGAMO43451 1857 aa15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 MYO5AQ9Y4I1 1855 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PRMT2P55345 433 aa15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 NBPF11Q86T75 865 aa15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 TRIM47Q96LD4 638 aa15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 CPA4Q9UI42 421 aa15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 NOP58Q9Y2X3 529 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ZHX2Q9Y6X8 837 aa15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 COL2A1P02458 1487 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ZBTB7BO15156 539 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 LDHCP07864 332 aa15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 KIF22Q14807 665 aa15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SLC9C1Q4G0N8 1177 aa15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ZNF512BQ96KM6 892 aaPredicted RBP15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SRRDQ9UH36 339 aa15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SLC45A1Q9Y2W3 748 aa15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 CDK5RAP2Q96SN8 1893 aa15.11■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 UQCRFS1P1P0C7P4 283 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 RLBP1P12271 317 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PSMC4P43686 418 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 GSTO1P78417 241 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 TNNI3KQ59H18 835 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 FASTKD5Q7L8L6 764 aaKnown RBP15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 MIER1Q8N108 512 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 FPGT-TNNI3KV9GXZ4 949 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 CEP290O15078 2479 aa15.1■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 SIPA1L1O43166 1804 aa15.09■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PPP4CP60510 307 aa15.09■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PICALMQ13492 652 aa15.09■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 ZSCAN29Q8IWY8 852 aaPredicted RBP15.09■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 TMEM106CQ9BVX2 250 aa15.09■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 PICK1Q9NRD5 415 aa15.09■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 FOCADQ5VW36 1801 aa15.08■□□□□ 0.01
MSH5-SAPCD1-205ENST00000476085 IGSF3O75054 1194 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 CYP2E1P05181 493 aaPredicted RBP15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 CYP2C8P10632 490 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 OSBPP22059 807 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 RRP1BQ14684 758 aaKnown RBP15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 GORABQ5T7V8 394 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 METTL16Q86W50 562 aaKnown RBP15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 SH3TC2Q8TF17 1288 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 PARK7Q99497 189 aaKnown RBP15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 DBNDD2Q9BQY9 259 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 OSBPL5Q9H0X9 879 aaPredicted RBP15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 ATAD5Q96QE3 1844 aa15.08■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 RAI14Q9P0K7 980 aa15.07■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.07■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 HOXD10P28358 340 aa15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 CAP2P40123 477 aa15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 HNRNPUQ00839 825 aaKnown RBP eCLIP15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 ADGRA1Q86SQ6 560 aa15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 LRP2BPQ9P2M1 347 aa15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 LOC285556D6RIA3 1793 aa15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 MAST2Q6P0Q8 1798 aa15.06■□□□□ 0
MSH5-SAPCD1-205ENST00000476085 FAM196BA6NMK8 535 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SURF6O75683 361 aaKnown RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms