RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SCYL3Q8IZE3 742 aa24.36■■□□□ 1.49
COL9A3-210ENST00000472880 SPATA5Q8NB90 893 aa24.36■■□□□ 1.49
COL9A3-210ENST00000472880 PICK1Q9NRD5 415 aa24.36■■□□□ 1.49
COL9A3-210ENST00000472880 ARID4AP29374 1257 aaPredicted RBP24.35■■□□□ 1.49
COL9A3-210ENST00000472880 GSTO1P78417 241 aa24.35■■□□□ 1.49
COL9A3-210ENST00000472880 PI16Q6UXB8 463 aa24.35■■□□□ 1.49
COL9A3-210ENST00000472880 NBPF11Q86T75 865 aa24.35■■□□□ 1.49
COL9A3-210ENST00000472880 ARHGAP39Q9C0H5 1083 aa24.35■■□□□ 1.49
COL9A3-210ENST00000472880 DDX4Q9NQI0 724 aaKnown RBP24.35■■□□□ 1.49
COL9A3-210ENST00000472880 PHF20L1A8MW92 1017 aa24.34■■□□□ 1.49
COL9A3-210ENST00000472880 DIEXFQ68CQ4 756 aaKnown RBP24.34■■□□□ 1.49
COL9A3-210ENST00000472880 SH3BP5LQ7L8J4 393 aa24.34■■□□□ 1.49
COL9A3-210ENST00000472880 ZNF333Q96JL9 665 aa24.34■■□□□ 1.49
COL9A3-210ENST00000472880 TMEM106CQ9BVX2 250 aa24.34■■□□□ 1.49
COL9A3-210ENST00000472880 CPA4Q9UI42 421 aa24.34■■□□□ 1.49
COL9A3-210ENST00000472880 DOCK1Q14185 1865 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 GPR75-ASB3A0A0A6YYF3 556 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 DDTLA6NHG4 134 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-210ENST00000472880 CXCL11O14625 94 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 GNRH1P01148 92 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 LDHCP07864 332 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 UQCRFS1P1P0C7P4 283 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 C17orf99Q6UX52 265 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 FTSJ3Q8IY81 847 aaKnown RBP24.33■■□□□ 1.49
COL9A3-210ENST00000472880 PARK7Q99497 189 aaKnown RBP24.33■■□□□ 1.49
COL9A3-210ENST00000472880 RAI14Q9P0K7 980 aa24.33■■□□□ 1.49
COL9A3-210ENST00000472880 OS9Q13438 667 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-210ENST00000472880 TBC1D9Q6ZT07 1266 aa24.32■■□□□ 1.48
COL9A3-210ENST00000472880 ZHX2Q9Y6X8 837 aa24.32■■□□□ 1.48
COL9A3-210ENST00000472880 PTPRAP18433 802 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 MCAMP43121 646 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 RHBDL3P58872 404 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 MOGSQ13724 837 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 ZNF384Q8TF68 577 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 NSUN4Q96CB9 384 aaKnown RBP24.31■■□□□ 1.48
COL9A3-210ENST00000472880 MAST2Q6P0Q8 1798 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 ADGRA2Q96PE1 1338 aa24.31■■□□□ 1.48
COL9A3-210ENST00000472880 ECM2O94769 699 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-210ENST00000472880 MAP4K4O95819 1239 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-210ENST00000472880 PRMT2P55345 433 aa24.3■■□□□ 1.48
COL9A3-210ENST00000472880 MAP3K10Q02779 954 aa24.3■■□□□ 1.48
COL9A3-210ENST00000472880 POLA2Q14181 598 aa24.3■■□□□ 1.48
COL9A3-210ENST00000472880 LRP2BPQ9P2M1 347 aa24.3■■□□□ 1.48
COL9A3-210ENST00000472880 A0A0G2JLL6 359 aaPredicted RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 CTNND1O60716 968 aaKnown RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 NPM3O75607 178 aaKnown RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 EN2P19622 333 aaPredicted RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 TTC39AQ5SRH9 613 aa24.29■■□□□ 1.48
COL9A3-210ENST00000472880 FASTKD5Q7L8L6 764 aaKnown RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 PRRT2Q7Z6L0 340 aaPredicted RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 ITPRIPQ8IWB1 547 aa24.29■■□□□ 1.48
COL9A3-210ENST00000472880 NOL10Q9BSC4 688 aaKnown RBP24.29■■□□□ 1.48
COL9A3-210ENST00000472880 GPR108Q9NPR9 543 aa24.29■■□□□ 1.48
COL9A3-210ENST00000472880 CENPFP49454 3210 aa24.29■■□□□ 1.48
COL9A3-210ENST00000472880 COL2A1P02458 1487 aaPredicted RBP24.28■■□□□ 1.48
COL9A3-210ENST00000472880 PSMC4P43686 418 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 SLC4A8Q2Y0W8 1093 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 TNNI3KQ59H18 835 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 GPAT2Q6NUI2 795 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 GADL1Q6ZQY3 521 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 MIER1Q8N108 512 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 SSH3Q8TE77 659 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 SH3TC2Q8TF17 1288 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 C1orf115Q9H7X2 142 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 FPGT-TNNI3KV9GXZ4 949 aa24.28■■□□□ 1.48
COL9A3-210ENST00000472880 SLURP2P0DP57 97 aa24.27■■□□□ 1.48
COL9A3-210ENST00000472880 ATP8B2P98198 1209 aa24.27■■□□□ 1.48
COL9A3-210ENST00000472880 CCDC158Q5M9N0 1113 aa24.27■■□□□ 1.48
COL9A3-210ENST00000472880 TRIM47Q96LD4 638 aa24.27■■□□□ 1.48
COL9A3-210ENST00000472880 AFG3L2Q9Y4W6 797 aa24.27■■□□□ 1.48
COL9A3-210ENST00000472880 TBC1D12O60347 775 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 SURF6O75683 361 aaKnown RBP24.26■■□□□ 1.47
COL9A3-210ENST00000472880 FMNL1O95466 1100 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-210ENST00000472880 MYCP01106 439 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-210ENST00000472880 CYP2C8P10632 490 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 HOXD10P28358 340 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 TEX11Q8IYF3 940 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 DBNDD2Q9BQY9 259 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 OSBPL5Q9H0X9 879 aaPredicted RBP24.26■■□□□ 1.47
COL9A3-210ENST00000472880 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.26■■□□□ 1.47
COL9A3-210ENST00000472880 SRRDQ9UH36 339 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 PHIPQ8WWQ0 1821 aa24.26■■□□□ 1.47
COL9A3-210ENST00000472880 PTPRFP10586 1907 aa24.25■■□□□ 1.47
COL9A3-210ENST00000472880 TRIM75PA6NK02 468 aa24.25■■□□□ 1.47
COL9A3-210ENST00000472880 FAM196BA6NMK8 535 aa24.25■■□□□ 1.47
COL9A3-210ENST00000472880 CTGFP29279 349 aa24.25■■□□□ 1.47
COL9A3-210ENST00000472880 SNRKQ9NRH2 765 aa24.25■■□□□ 1.47
COL9A3-210ENST00000472880 KIAA0100Q14667 2235 aaKnown RBP24.25■■□□□ 1.47
COL9A3-210ENST00000472880 OSBPP22059 807 aa24.24■■□□□ 1.47
COL9A3-210ENST00000472880 NAA16Q6N069 864 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-210ENST00000472880 RAET1EQ8TD07 263 aa24.24■■□□□ 1.47
COL9A3-210ENST00000472880 SLC45A1Q9Y2W3 748 aa24.24■■□□□ 1.47
COL9A3-210ENST00000472880 BCRP11274 1271 aa24.23■■□□□ 1.47
COL9A3-210ENST00000472880 RLBP1P12271 317 aa24.23■■□□□ 1.47
COL9A3-210ENST00000472880 FCGRTP55899 365 aa24.23■■□□□ 1.47
COL9A3-210ENST00000472880 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.23■■□□□ 1.47
COL9A3-210ENST00000472880 MYPNQ86TC9 1320 aa24.23■■□□□ 1.47
COL9A3-210ENST00000472880 ATAD5Q96QE3 1844 aa24.22■■□□□ 1.47
COL9A3-210ENST00000472880 BAG3O95817 575 aa24.22■■□□□ 1.47
COL9A3-210ENST00000472880 PLCG2P16885 1265 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms