RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 MUC3BQ9H195 1237 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 VTI1BQ9UEU0 232 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 SOX13Q9UN79 622 aa8.97□□□□□ -0.97
PTCD3-208ENST00000469585 VWDEQ8N2E2 1590 aa8.96□□□□□ -0.97
PTCD3-208ENST00000469585 GSTT1P30711 240 aa8.96□□□□□ -0.98
PTCD3-208ENST00000469585 CACTIN-AS1Q8N1I8 211 aa8.96□□□□□ -0.98
PTCD3-208ENST00000469585 CRELD1Q96HD1 420 aa8.96□□□□□ -0.98
PTCD3-208ENST00000469585 BACH2Q9BYV9 841 aa8.96□□□□□ -0.98
PTCD3-208ENST00000469585 ENAMQ9NRM1 1142 aa8.96□□□□□ -0.98
PTCD3-208ENST00000469585 E9PSI1 815 aa8.95□□□□□ -0.98
PTCD3-208ENST00000469585 XRCC5P13010 732 aaKnown RBP8.95□□□□□ -0.98
PTCD3-208ENST00000469585 NID1P14543 1247 aa8.95□□□□□ -0.98
PTCD3-208ENST00000469585 VN1R5Q7Z5H4 357 aa8.95□□□□□ -0.98
PTCD3-208ENST00000469585 NEDD1Q8NHV4 660 aa8.95□□□□□ -0.98
PTCD3-208ENST00000469585 SH2B1Q9NRF2 756 aaPredicted RBP8.95□□□□□ -0.98
PTCD3-208ENST00000469585 CDC27P30260 824 aa8.94□□□□□ -0.98
PTCD3-208ENST00000469585 DTHD1Q6ZMT9 781 aa8.94□□□□□ -0.98
PTCD3-208ENST00000469585 ZSCAN1Q8NBB4 408 aa8.94□□□□□ -0.98
PTCD3-208ENST00000469585 ANKRD24Q8TF21 1146 aa8.94□□□□□ -0.98
PTCD3-208ENST00000469585 ZNF576Q9H609 170 aa8.94□□□□□ -0.98
PTCD3-208ENST00000469585 PTPRTO14522 1441 aa8.94□□□□□ -0.98
PTCD3-208ENST00000469585 EPHA1P21709 976 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 IDI1Q13907 227 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 TSNAXIP1Q2TAA8 658 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 MSL1Q68DK7 614 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 LINC00114Q6XXX2 140 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 IL22RA1Q8N6P7 574 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 RAB3GAP2Q9H2M9 1393 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 CCDC144AA2RUR9 1427 aa8.93□□□□□ -0.98
PTCD3-208ENST00000469585 KDM5AP29375 1690 aaKnown RBP8.92□□□□□ -0.98
PTCD3-208ENST00000469585 SCAF11Q99590 1463 aaKnown RBP8.92□□□□□ -0.98
PTCD3-208ENST00000469585 NOS1P29475 1434 aa8.92□□□□□ -0.98
PTCD3-208ENST00000469585 USP31Q70CQ4 1352 aa8.92□□□□□ -0.98
PTCD3-208ENST00000469585 SNRPNP63162 240 aaKnown RBP8.92□□□□□ -0.98
PTCD3-208ENST00000469585 RPS26P11Q5JNZ5 115 aaPredicted RBP8.92□□□□□ -0.98
PTCD3-208ENST00000469585 MEI1Q5TIA1 1274 aa8.92□□□□□ -0.98
PTCD3-208ENST00000469585 MPHOSPH9Q99550 1183 aa8.92□□□□□ -0.98
PTCD3-208ENST00000469585 ZFYVE1Q9HBF4 777 aa8.92□□□□□ -0.98
PTCD3-208ENST00000469585 PPM1HQ9ULR3 514 aa8.92□□□□□ -0.98
PTCD3-208ENST00000469585 POLR1AO95602 1720 aaPredicted RBP8.91□□□□□ -0.98
PTCD3-208ENST00000469585 E9PCH4 1651 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 ADGRB3O60242 1522 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 FAAP100Q0VG06 881 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 WFDC8Q8IUA0 241 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 CLEC4MQ9H2X3 399 aaPredicted RBP8.91□□□□□ -0.98
PTCD3-208ENST00000469585 RRAGCQ9HB90 399 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 AKAP2Q9Y2D5 859 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 PPME1Q9Y570 386 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 SPHKAPQ2M3C7 1700 aa8.91□□□□□ -0.98
PTCD3-208ENST00000469585 NPHP4O75161 1426 aaPredicted RBP8.9□□□□□ -0.98
PTCD3-208ENST00000469585 TMEM2Q9UHN6 1383 aa8.9□□□□□ -0.98
PTCD3-208ENST00000469585 H3BRJ5 948 aa8.9□□□□□ -0.98
PTCD3-208ENST00000469585 ST13P50502 369 aaKnown RBP8.9□□□□□ -0.98
PTCD3-208ENST00000469585 INSM1Q01101 510 aaPredicted RBP8.9□□□□□ -0.98
PTCD3-208ENST00000469585 TAF1CQ15572 869 aaPredicted RBP8.9□□□□□ -0.98
PTCD3-208ENST00000469585 ZNF423Q2M1K9 1284 aa8.9□□□□□ -0.98
PTCD3-208ENST00000469585 TMEM87AQ8NBN3 555 aa8.9□□□□□ -0.98
PTCD3-208ENST00000469585 IGSF5Q9NSI5 407 aa8.9□□□□□ -0.98
PTCD3-208ENST00000469585 PIK3C2BO00750 1634 aa8.9□□□□□ -0.99
PTCD3-208ENST00000469585 UBR1Q8IWV7 1749 aa8.89□□□□□ -0.99
PTCD3-208ENST00000469585 ESRRAP11474 423 aaPredicted RBP8.89□□□□□ -0.99
PTCD3-208ENST00000469585 PCDH1Q08174 1060 aa8.89□□□□□ -0.99
PTCD3-208ENST00000469585 TRIM11Q96F44 468 aa8.89□□□□□ -0.99
PTCD3-208ENST00000469585 SEC31BQ9NQW1 1179 aa8.89□□□□□ -0.99
PTCD3-208ENST00000469585 RPGRIP1LQ68CZ1 1315 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 SYNMO15061 1565 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 FAM177BA6PVY3 158 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 LINC01387J3KSC0 135 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 SOX1O00570 391 aaPredicted RBP8.88□□□□□ -0.99
PTCD3-208ENST00000469585 TM4SF5O14894 197 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 CABP4P57796 275 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 DMRTC2Q8IXT2 367 aaPredicted RBP8.88□□□□□ -0.99
PTCD3-208ENST00000469585 TTF2Q9UNY4 1162 aaKnown RBP8.88□□□□□ -0.99
PTCD3-208ENST00000469585 ADAMTS8Q9UP79 889 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 KIF1BO60333 1816 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 SLIT1O75093 1534 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 TRPM2O94759 1503 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 RIMS2Q9UQ26 1411 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 IQGAP1P46940 1657 aa8.88□□□□□ -0.99
PTCD3-208ENST00000469585 B3GALT4O96024 378 aa8.87□□□□□ -0.99
PTCD3-208ENST00000469585 CDC25BP30305 580 aa8.87□□□□□ -0.99
PTCD3-208ENST00000469585 IKBKEQ14164 716 aa8.87□□□□□ -0.99
PTCD3-208ENST00000469585 TXNDC11Q6PKC3 985 aa8.87□□□□□ -0.99
PTCD3-208ENST00000469585 TPTE2Q6XPS3 522 aa8.87□□□□□ -0.99
PTCD3-208ENST00000469585 GNB5O14775 395 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 SCAMP3O14828 347 aaKnown RBP8.86□□□□□ -0.99
PTCD3-208ENST00000469585 FBXO24O75426 580 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 FANCCQ00597 558 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 SETDB1Q15047 1291 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 HGSNATQ68CP4 663 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 WNT8BQ93098 351 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 NECAB3Q96P71 396 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-208ENST00000469585 METTL5Q9NRN9 209 aaKnown RBP8.86□□□□□ -0.99
PTCD3-208ENST00000469585 MKL2Q9ULH7 1088 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 STRCQ7RTU9 1775 aa8.86□□□□□ -0.99
PTCD3-208ENST00000469585 MED14O60244 1454 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 ENC1O14682 589 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 FSCN2O14926 492 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 PIP4K2BP78356 416 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 RGL3Q3MIN7 710 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms