RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GSTO1P78417 241 aa20.41■□□□□ 0.86
CCDC28B-204ENST00000469003 SH3BP5LQ7L8J4 393 aa20.41■□□□□ 0.86
CCDC28B-204ENST00000469003 ZSCAN29Q8IWY8 852 aaPredicted RBP20.41■□□□□ 0.86
CCDC28B-204ENST00000469003 ZNF384Q8TF68 577 aa20.41■□□□□ 0.86
CCDC28B-204ENST00000469003 GPR108Q9NPR9 543 aa20.41■□□□□ 0.86
CCDC28B-204ENST00000469003 DDX4Q9NQI0 724 aaKnown RBP20.41■□□□□ 0.86
CCDC28B-204ENST00000469003 PHF20L1A8MW92 1017 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 LDHCP07864 332 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 MCAMP43121 646 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 RHBDL3P58872 404 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 MAP3K10Q02779 954 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 ZBED9Q6R2W3 1325 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 TBC1D9Q6ZT07 1266 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 ANKRD23Q86SG2 305 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 ITPRIPQ8IWB1 547 aa20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 NSUN4Q96CB9 384 aaKnown RBP20.4■□□□□ 0.86
CCDC28B-204ENST00000469003 DDTLA6NHG4 134 aaPredicted RBP20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 ZBTB7BO15156 539 aaPredicted RBP20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 NPM3O75607 178 aaKnown RBP20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 MAP4K4O95819 1239 aaPredicted RBP20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 RLBP1P12271 317 aa20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 OS9Q13438 667 aaPredicted RBP20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 PICALMQ13492 652 aa20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 TNNI3KQ59H18 835 aa20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 SCYL3Q8IZE3 742 aa20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 C1orf115Q9H7X2 142 aa20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 FPGT-TNNI3KV9GXZ4 949 aa20.39■□□□□ 0.85
CCDC28B-204ENST00000469003 SURF6O75683 361 aaKnown RBP20.38■□□□□ 0.85
CCDC28B-204ENST00000469003 ARMC5Q96C12 935 aa20.38■□□□□ 0.85
CCDC28B-204ENST00000469003 RAI14Q9P0K7 980 aa20.38■□□□□ 0.85
CCDC28B-204ENST00000469003 HTTP42858 3142 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 RBBP6Q7Z6E9 1792 aaKnown RBP20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 CXCL11O14625 94 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 LACTBP83111 547 aaPredicted RBP20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 MOGSQ13724 837 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 KIF22Q14807 665 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 PICK1Q9NRD5 415 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 LRP2BPQ9P2M1 347 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 NOP58Q9Y2X3 529 aaKnown RBP20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 DOCK1Q14185 1865 aa20.37■□□□□ 0.85
CCDC28B-204ENST00000469003 MKI67P46013 3256 aaKnown RBP20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 PDHXO00330 501 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 PTPRAP18433 802 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 HABP4Q5JVS0 413 aaKnown RBP20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 CCDC158Q5M9N0 1113 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 TTC39AQ5SRH9 613 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 C17orf99Q6UX52 265 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 DBNDD2Q9BQY9 259 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 ZSWIM8A7E2V4 1837 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 MAST2Q6P0Q8 1798 aa20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 COL2A1P02458 1487 aaPredicted RBP20.36■□□□□ 0.85
CCDC28B-204ENST00000469003 TBC1D12O60347 775 aa20.35■□□□□ 0.85
CCDC28B-204ENST00000469003 CTNND1O60716 968 aaKnown RBP20.35■□□□□ 0.85
CCDC28B-204ENST00000469003 ARHGAP39Q9C0H5 1083 aa20.35■□□□□ 0.85
CCDC28B-204ENST00000469003 PTCH2Q9Y6C5 1203 aa20.35■□□□□ 0.85
CCDC28B-204ENST00000469003 ZHX2Q9Y6X8 837 aa20.35■□□□□ 0.85
CCDC28B-204ENST00000469003 ADGRA2Q96PE1 1338 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 POTEFA5A3E0 1075 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 GNRH1P01148 92 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 SLURP2P0DP57 97 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 ZNF512BQ96KM6 892 aaPredicted RBP20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 SNRKQ9NRH2 765 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 CPA4Q9UI42 421 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 AFG3L2Q9Y4W6 797 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 PHIPQ8WWQ0 1821 aa20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 KIAA0100Q14667 2235 aaKnown RBP20.34■□□□□ 0.85
CCDC28B-204ENST00000469003 A0A0G2JLL6 359 aaPredicted RBP20.33■□□□□ 0.85
CCDC28B-204ENST00000469003 GPAT2Q6NUI2 795 aa20.33■□□□□ 0.85
CCDC28B-204ENST00000469003 FASTKD5Q7L8L6 764 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-204ENST00000469003 PRRT2Q7Z6L0 340 aaPredicted RBP20.33■□□□□ 0.85
CCDC28B-204ENST00000469003 NOL10Q9BSC4 688 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-204ENST00000469003 OSBPL5Q9H0X9 879 aaPredicted RBP20.33■□□□□ 0.85
CCDC28B-204ENST00000469003 PTPRFP10586 1907 aa20.33■□□□□ 0.84
CCDC28B-204ENST00000469003 IGSF3O75054 1194 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 PRMT2P55345 433 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 SLC9C1Q4G0N8 1177 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 NAA16Q6N069 864 aaPredicted RBP20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 CEP85Q6P2H3 762 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 NBPF11Q86T75 865 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 TEX11Q8IYF3 940 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 ZNF333Q96JL9 665 aa20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 PARK7Q99497 189 aaKnown RBP20.32■□□□□ 0.84
CCDC28B-204ENST00000469003 CYP2E1P05181 493 aaPredicted RBP20.31■□□□□ 0.84
CCDC28B-204ENST00000469003 PANK1Q8TE04 598 aa20.31■□□□□ 0.84
CCDC28B-204ENST00000469003 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.31■□□□□ 0.84
CCDC28B-204ENST00000469003 DBNLQ9UJU6 430 aaKnown RBP20.31■□□□□ 0.84
CCDC28B-204ENST00000469003 MYO5AQ9Y4I1 1855 aaKnown RBP20.3■□□□□ 0.84
CCDC28B-204ENST00000469003 BAG3O95817 575 aa20.3■□□□□ 0.84
CCDC28B-204ENST00000469003 PLCG2P16885 1265 aa20.3■□□□□ 0.84
CCDC28B-204ENST00000469003 SH3RF3Q8TEJ3 882 aaPredicted RBP20.3■□□□□ 0.84
CCDC28B-204ENST00000469003 CENPFP49454 3210 aa20.3■□□□□ 0.84
CCDC28B-204ENST00000469003 FAM196BA6NMK8 535 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 BCRP11274 1271 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 CTGFP29279 349 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 ZAP70P43403 619 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 PSMC4P43686 418 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 PPP4CP60510 307 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 GADL1Q6ZQY3 521 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 EAF2Q96CJ1 260 aaPredicted RBP20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 TMEM106CQ9BVX2 250 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms