RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 APPBP2Q92624 585 aa16.54■□□□□ 0.24
LIMD1-203ENST00000465039 KLRG1Q96E93 195 aa16.54■□□□□ 0.24
LIMD1-203ENST00000465039 CRNKL1Q9BZJ0 848 aaKnown RBP16.54■□□□□ 0.24
LIMD1-203ENST00000465039 OSBPL5Q9H0X9 879 aaPredicted RBP16.54■□□□□ 0.24
LIMD1-203ENST00000465039 DDX60LQ5H9U9 1706 aaKnown RBP16.53■□□□□ 0.24
LIMD1-203ENST00000465039 FLT1P17948 1338 aa16.53■□□□□ 0.24
LIMD1-203ENST00000465039 RNF113AO15541 343 aaKnown RBP16.53■□□□□ 0.24
LIMD1-203ENST00000465039 TBC1D12O60347 775 aa16.53■□□□□ 0.24
LIMD1-203ENST00000465039 CCDC102AQ96A19 550 aa16.53■□□□□ 0.24
LIMD1-203ENST00000465039 CCDC136Q96JN2 1154 aa16.53■□□□□ 0.24
LIMD1-203ENST00000465039 LAMB1P07942 1786 aa16.52■□□□□ 0.24
LIMD1-203ENST00000465039 RGMBQ6NW40 437 aa16.52■□□□□ 0.24
LIMD1-203ENST00000465039 DLK2Q6UY11 383 aa16.52■□□□□ 0.24
LIMD1-203ENST00000465039 ANKRD13AQ8IZ07 590 aa16.52■□□□□ 0.24
LIMD1-203ENST00000465039 CSRNP1Q96S65 589 aa16.52■□□□□ 0.24
LIMD1-203ENST00000465039 FSD1Q9BTV5 496 aa16.52■□□□□ 0.24
LIMD1-203ENST00000465039 DDX4Q9NQI0 724 aaKnown RBP16.52■□□□□ 0.24
LIMD1-203ENST00000465039 HERC5Q9UII4 1024 aaKnown RBP16.52■□□□□ 0.24
LIMD1-203ENST00000465039 SCAF8Q9UPN6 1271 aaKnown RBP16.52■□□□□ 0.24
LIMD1-203ENST00000465039 GNAT2P19087 354 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 TCP10Q12799 353 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 NOGQ13253 232 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 TTLL12Q14166 644 aaPredicted RBP16.51■□□□□ 0.23
LIMD1-203ENST00000465039 PRAMEF18Q5VWM3 479 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 METTL16Q86W50 562 aaKnown RBP16.51■□□□□ 0.23
LIMD1-203ENST00000465039 REM2Q8IYK8 340 aaPredicted RBP16.51■□□□□ 0.23
LIMD1-203ENST00000465039 MIGA1Q8NAN2 632 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 AIDAQ96BJ3 306 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 ZNF341Q9BYN7 854 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 ATP8A2Q9NTI2 1148 aa16.51■□□□□ 0.23
LIMD1-203ENST00000465039 OTOFQ9HC10 1997 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 HIP1O00291 1037 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 MAP2K2P36507 400 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 PICALMQ13492 652 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 GIMAP6Q6P9H5 292 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 ZSCAN29Q8IWY8 852 aaPredicted RBP16.5■□□□□ 0.23
LIMD1-203ENST00000465039 JMYQ8N9B5 988 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.5■□□□□ 0.23
LIMD1-203ENST00000465039 TGFBRAP1Q8WUH2 860 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 DDRGK1Q96HY6 314 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 EHD4Q9H223 541 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 PI4KBQ9UBF8 816 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 MKRN1Q9UHC7 482 aaKnown RBP16.5■□□□□ 0.23
LIMD1-203ENST00000465039 ZNF112Q9UJU3 913 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 ANGEL1Q9UNK9 670 aaKnown RBP16.5■□□□□ 0.23
LIMD1-203ENST00000465039 NAV1Q8NEY1 1877 aa16.5■□□□□ 0.23
LIMD1-203ENST00000465039 AK9Q5TCS8 1911 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 USP2O75604 605 aaPredicted RBP16.49■□□□□ 0.23
LIMD1-203ENST00000465039 MBD4O95243 580 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 SLC10A3P09131 477 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 ZBTB48P10074 688 aaPredicted RBP16.49■□□□□ 0.23
LIMD1-203ENST00000465039 PDE4AP27815 886 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 USP5P45974 858 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 DYNLL1P63167 89 aaKnown RBP16.49■□□□□ 0.23
LIMD1-203ENST00000465039 ZMYM1Q5SVZ6 1142 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 SH3BP5LQ7L8J4 393 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 FOXP4Q8IVH2 680 aaPredicted RBP16.49■□□□□ 0.23
LIMD1-203ENST00000465039 CDAN1Q8IWY9 1227 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 CAPNS2Q96L46 248 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 PPP4R2Q9NY27 417 aa16.49■□□□□ 0.23
LIMD1-203ENST00000465039 DDTLA6NHG4 134 aaPredicted RBP16.48■□□□□ 0.23
LIMD1-203ENST00000465039 HLA-DOAP06340 250 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 MAP3K9P80192 1104 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 NOL9Q5SY16 702 aaKnown RBP16.48■□□□□ 0.23
LIMD1-203ENST00000465039 TTC22Q5TAA0 569 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 TTC6Q86TZ1 520 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 LCORLQ8N3X6 602 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 GINM1Q9NU53 330 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 CSADQ9Y600 493 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 MYH1P12882 1939 aa16.48■□□□□ 0.23
LIMD1-203ENST00000465039 WDR33Q9C0J8 1336 aaKnown RBP16.47■□□□□ 0.23
LIMD1-203ENST00000465039 UBE2Q2LH0YL09 131 aa16.47■□□□□ 0.23
LIMD1-203ENST00000465039 VEGFBP49765 207 aa16.47■□□□□ 0.23
LIMD1-203ENST00000465039 ZNF157P51786 506 aaPredicted RBP16.47■□□□□ 0.23
LIMD1-203ENST00000465039 HTRA3P83110 453 aa16.47■□□□□ 0.23
LIMD1-203ENST00000465039 MAPKAPK5Q8IW41 473 aa16.47■□□□□ 0.23
LIMD1-203ENST00000465039 ZFPM1Q8IX07 1006 aa16.47■□□□□ 0.23
LIMD1-203ENST00000465039 STRBPQ96SI9 672 aaKnown RBP16.47■□□□□ 0.23
LIMD1-203ENST00000465039 PUS7LQ9H0K6 701 aaKnown RBP16.47■□□□□ 0.23
LIMD1-203ENST00000465039 HELLSQ9NRZ9 838 aa16.47■□□□□ 0.23
LIMD1-203ENST00000465039 FAM155AB1AL88 458 aaPredicted RBP16.46■□□□□ 0.23
LIMD1-203ENST00000465039 TRIM6-TRIM34B2RNG4 842 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 GPAA1O43292 621 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 RASAL3Q86YV0 1011 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 AMOTL1Q8IY63 956 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 OSBP2Q969R2 916 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 WRNIP1Q96S55 665 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 ARMT1Q9H993 441 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 DCP1AQ9NPI6 582 aaPredicted RBP16.46■□□□□ 0.23
LIMD1-203ENST00000465039 SIPA1L1O43166 1804 aa16.46■□□□□ 0.23
LIMD1-203ENST00000465039 PHF20L1A8MW92 1017 aa16.45■□□□□ 0.22
LIMD1-203ENST00000465039 CTNND1O60716 968 aaKnown RBP16.45■□□□□ 0.22
LIMD1-203ENST00000465039 MFAP1P55081 439 aaKnown RBP16.45■□□□□ 0.22
LIMD1-203ENST00000465039 VGLL4Q14135 290 aa16.45■□□□□ 0.22
LIMD1-203ENST00000465039 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.45■□□□□ 0.22
LIMD1-203ENST00000465039 SLC10A4Q96EP9 437 aa16.45■□□□□ 0.22
LIMD1-203ENST00000465039 TBC1D2Q9BYX2 928 aa16.45■□□□□ 0.22
LIMD1-203ENST00000465039 ARPP21Q9UBL0 812 aaPredicted RBP16.45■□□□□ 0.22
LIMD1-203ENST00000465039 SERPINB13Q9UIV8 391 aa16.45■□□□□ 0.22
LIMD1-203ENST00000465039 DOCK1Q14185 1865 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms