RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 HSP90B2PQ58FF3 399 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 ZMYM1Q5SVZ6 1142 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 CCDC102BQ68D86 513 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 KRT40Q6A162 431 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 BRAPQ7Z569 592 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 SMYD4Q8IYR2 804 aaPredicted RBP13.37□□□□□ -0.27
CPSF3-202ENST00000460593 MICALL1Q8N3F8 863 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 DSCC1Q9BVC3 393 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 COPRSQ9NQ92 184 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 DDX21Q9NR30 783 aaKnown RBP eCLIP13.37□□□□□ -0.27
CPSF3-202ENST00000460593 TRIM10Q9UDY6 481 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 HDAC5Q9UQL6 1122 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 FOXP2O15409 715 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 KIF5CO60282 957 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 NOM1Q5C9Z4 860 aaKnown RBP13.37□□□□□ -0.27
CPSF3-202ENST00000460593 C1orf141Q5JVX7 400 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 INCENPQ9NQS7 918 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 SERTAD1Q9UHV2 236 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 PXDNQ92626 1479 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 ENC1O14682 589 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 RNF40O75150 1001 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 PLEKHO1Q53GL0 409 aaPredicted RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 AKAP4Q5JQC9 854 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 USP49Q70CQ1 688 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 MICU3Q86XE3 530 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 CCDC82Q8N4S0 544 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 PTPRUQ92729 1446 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 A0A087WZG4 1122 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 GOLGA6L9A6NEM1 432 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 AKR1B15C9JRZ8 316 aaPredicted RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 POLR2DO15514 142 aaKnown RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 LIG3P49916 1009 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 LRRC24Q50LG9 513 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 TTC19Q6DKK2 380 aaPredicted RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 PI16Q6UXB8 463 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 ESF1Q9H501 851 aaKnown RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 HDAC6Q9UBN7 1215 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 EIF3JO75822 258 aaKnown RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 GUCY2CP25092 1073 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 DHX8Q14562 1220 aaKnown RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 IGSF22Q8N9C0 903 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 CCDC85AQ96PX6 553 aaPredicted RBP13.36□□□□□ -0.27
CPSF3-202ENST00000460593 PIK3C2AO00443 1686 aa13.36□□□□□ -0.27
CPSF3-202ENST00000460593 FGAP02671 866 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 CASP14P31944 242 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 CORO7P57737 925 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 RAB21Q9UL25 225 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 ADAMTS13Q76LX8 1427 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 RGPD8O14715 1765 aaPredicted RBP13.35□□□□□ -0.27
CPSF3-202ENST00000460593 RNF225M0QZC1 329 aaPredicted RBP13.35□□□□□ -0.27
CPSF3-202ENST00000460593 SRGAP2O75044 1071 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 ERLIN1O75477 346 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 A1BGP04217 495 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 IFIT1P09914 478 aaKnown RBP13.35□□□□□ -0.27
CPSF3-202ENST00000460593 ZNF18P17022 549 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 MAP3K14Q99558 947 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 POLD4Q9HCU8 107 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 HELLSQ9NRZ9 838 aa13.35□□□□□ -0.27
CPSF3-202ENST00000460593 RNF113AO15541 343 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 MRPS25P82663 173 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CEP112Q8N8E3 955 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 MSANTD4Q8NCY6 345 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CTAGE9A4FU28 777 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CCT6AP40227 531 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 FXR1P51114 621 aaKnown RBP eCLIP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 POSTNQ15063 836 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 HNRNPLLQ8WVV9 542 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 KAT2BQ92831 832 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CAPZA3Q96KX2 299 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CTAGE15A4D2H0 777 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 SYF2O95926 243 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CTAGE8P0CG41 777 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 AFMP43652 599 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 USP5P45974 858 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 NR1I3Q14994 352 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 TTC39AQ5SRH9 613 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 FKBP15Q5T1M5 1219 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CTAGE6Q86UF2 777 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CTAGE4Q8IX94 777 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 MB21D2Q8IYB1 491 aaPredicted RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 CMTR1Q8N1G2 835 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 STAMQ92783 540 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 PUS3Q9BZE2 481 aaKnown RBP13.34□□□□□ -0.27
CPSF3-202ENST00000460593 KCNJ14Q9UNX9 436 aa13.34□□□□□ -0.27
CPSF3-202ENST00000460593 MDM2Q00987 491 aaPredicted RBP13.33□□□□□ -0.28
CPSF3-202ENST00000460593 RALYLQ86SE5 291 aaKnown RBP13.33□□□□□ -0.28
CPSF3-202ENST00000460593 PPFIBP1Q86W92 1011 aa13.33□□□□□ -0.28
CPSF3-202ENST00000460593 SLF1Q9BQI6 1058 aa13.33□□□□□ -0.28
CPSF3-202ENST00000460593 METTL22Q9BUU2 404 aaPredicted RBP13.33□□□□□ -0.28
CPSF3-202ENST00000460593 PUS7LQ9H0K6 701 aaKnown RBP13.33□□□□□ -0.28
CPSF3-202ENST00000460593 FBXW10Q5XX13 1052 aa13.33□□□□□ -0.28
CPSF3-202ENST00000460593 FAM71BQ8TC56 605 aa13.33□□□□□ -0.28
CPSF3-202ENST00000460593 TOPAZ1Q8N9V7 1692 aa13.33□□□□□ -0.28
CPSF3-202ENST00000460593 CCT5P48643 541 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 HDGFP51858 240 aaKnown RBP13.32□□□□□ -0.28
CPSF3-202ENST00000460593 PPARDQ03181 441 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 DNAJC21Q5F1R6 531 aaKnown RBP13.32□□□□□ -0.28
CPSF3-202ENST00000460593 LMOD2Q6P5Q4 547 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 ANKRD13DQ6ZTN6 518 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms