RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 COL2A1P02458 1487 aaPredicted RBP28.04■■■□□ 2.08
PTPN4-207ENST00000460162 GPR75-ASB3A0A0A6YYF3 556 aa28.04■■■□□ 2.08
PTPN4-207ENST00000460162 ITPRIPQ8IWB1 547 aa28.04■■■□□ 2.08
PTPN4-207ENST00000460162 ZNF384Q8TF68 577 aa28.04■■■□□ 2.08
PTPN4-207ENST00000460162 MAP4K4O95819 1239 aaPredicted RBP28.03■■■□□ 2.08
PTPN4-207ENST00000460162 MCAMP43121 646 aa28.03■■■□□ 2.08
PTPN4-207ENST00000460162 ATP8B2P98198 1209 aa28.03■■■□□ 2.08
PTPN4-207ENST00000460162 TNNI3KQ59H18 835 aa28.03■■■□□ 2.08
PTPN4-207ENST00000460162 ZSCAN29Q8IWY8 852 aaPredicted RBP28.03■■■□□ 2.08
PTPN4-207ENST00000460162 NSUN4Q96CB9 384 aaKnown RBP28.03■■■□□ 2.08
PTPN4-207ENST00000460162 DDX4Q9NQI0 724 aaKnown RBP28.03■■■□□ 2.08
PTPN4-207ENST00000460162 FPGT-TNNI3KV9GXZ4 949 aa28.03■■■□□ 2.08
PTPN4-207ENST00000460162 NPM3O75607 178 aaKnown RBP28.02■■■□□ 2.08
PTPN4-207ENST00000460162 LDHCP07864 332 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 RHBDL3P58872 404 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 CAP1Q01518 475 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 OS9Q13438 667 aaPredicted RBP28.02■■■□□ 2.08
PTPN4-207ENST00000460162 SH3BP5LQ7L8J4 393 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 ANKRD23Q86SG2 305 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 C1orf115Q9H7X2 142 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 PTPRFP10586 1907 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 ZSWIM8A7E2V4 1837 aa28.02■■■□□ 2.08
PTPN4-207ENST00000460162 PHF20L1A8MW92 1017 aa28.01■■■□□ 2.07
PTPN4-207ENST00000460162 RLBP1P12271 317 aa28.01■■■□□ 2.07
PTPN4-207ENST00000460162 PICALMQ13492 652 aa28.01■■■□□ 2.07
PTPN4-207ENST00000460162 SCYL3Q8IZE3 742 aa28.01■■■□□ 2.07
PTPN4-207ENST00000460162 CENPFP49454 3210 aa28■■■□□ 2.07
PTPN4-207ENST00000460162 PHIPQ8WWQ0 1821 aa28■■■□□ 2.07
PTPN4-207ENST00000460162 DDTLA6NHG4 134 aaPredicted RBP28■■■□□ 2.07
PTPN4-207ENST00000460162 ZBTB7BO15156 539 aaPredicted RBP28■■■□□ 2.07
PTPN4-207ENST00000460162 MAP3K10Q02779 954 aa28■■■□□ 2.07
PTPN4-207ENST00000460162 TBC1D9Q6ZT07 1266 aa28■■■□□ 2.07
PTPN4-207ENST00000460162 ARMC5Q96C12 935 aa28■■■□□ 2.07
PTPN4-207ENST00000460162 RAI14Q9P0K7 980 aa28■■■□□ 2.07
PTPN4-207ENST00000460162 SURF6O75683 361 aaKnown RBP27.99■■■□□ 2.07
PTPN4-207ENST00000460162 PICK1Q9NRD5 415 aa27.99■■■□□ 2.07
PTPN4-207ENST00000460162 NOP58Q9Y2X3 529 aaKnown RBP27.99■■■□□ 2.07
PTPN4-207ENST00000460162 CXCL11O14625 94 aa27.98■■■□□ 2.07
PTPN4-207ENST00000460162 KIF22Q14807 665 aa27.98■■■□□ 2.07
PTPN4-207ENST00000460162 CCDC158Q5M9N0 1113 aa27.98■■■□□ 2.07
PTPN4-207ENST00000460162 TTC39AQ5SRH9 613 aa27.98■■■□□ 2.07
PTPN4-207ENST00000460162 LRP2BPQ9P2M1 347 aa27.98■■■□□ 2.07
PTPN4-207ENST00000460162 PDHXO00330 501 aa27.97■■■□□ 2.07
PTPN4-207ENST00000460162 LACTBP83111 547 aaPredicted RBP27.97■■■□□ 2.07
PTPN4-207ENST00000460162 MOGSQ13724 837 aa27.97■■■□□ 2.07
PTPN4-207ENST00000460162 DBNDD2Q9BQY9 259 aa27.97■■■□□ 2.07
PTPN4-207ENST00000460162 FOCADQ5VW36 1801 aa27.97■■■□□ 2.07
PTPN4-207ENST00000460162 ATAD5Q96QE3 1844 aa27.97■■■□□ 2.07
PTPN4-207ENST00000460162 ADGRA2Q96PE1 1338 aa27.96■■■□□ 2.07
PTPN4-207ENST00000460162 CDK5RAP2Q96SN8 1893 aa27.96■■■□□ 2.07
PTPN4-207ENST00000460162 ZNF512BQ96KM6 892 aaPredicted RBP27.96■■■□□ 2.07
PTPN4-207ENST00000460162 TBC1D12O60347 775 aa27.95■■■□□ 2.06
PTPN4-207ENST00000460162 CTNND1O60716 968 aaKnown RBP27.95■■■□□ 2.06
PTPN4-207ENST00000460162 IGSF3O75054 1194 aa27.95■■■□□ 2.06
PTPN4-207ENST00000460162 GNRH1P01148 92 aa27.95■■■□□ 2.06
PTPN4-207ENST00000460162 PTPRAP18433 802 aa27.95■■■□□ 2.06
PTPN4-207ENST00000460162 C17orf99Q6UX52 265 aa27.95■■■□□ 2.06
PTPN4-207ENST00000460162 MYO5AQ9Y4I1 1855 aaKnown RBP27.95■■■□□ 2.06
PTPN4-207ENST00000460162 PARK7Q99497 189 aaKnown RBP27.94■■■□□ 2.06
PTPN4-207ENST00000460162 NOL10Q9BSC4 688 aaKnown RBP27.94■■■□□ 2.06
PTPN4-207ENST00000460162 OSBPL5Q9H0X9 879 aaPredicted RBP27.94■■■□□ 2.06
PTPN4-207ENST00000460162 PTCH2Q9Y6C5 1203 aa27.94■■■□□ 2.06
PTPN4-207ENST00000460162 ZHX2Q9Y6X8 837 aa27.94■■■□□ 2.06
PTPN4-207ENST00000460162 A0A0G2JLL6 359 aaPredicted RBP27.93■■■□□ 2.06
PTPN4-207ENST00000460162 CEP85Q6P2H3 762 aa27.93■■■□□ 2.06
PTPN4-207ENST00000460162 PRRT2Q7Z6L0 340 aaPredicted RBP27.93■■■□□ 2.06
PTPN4-207ENST00000460162 SIPA1L1O43166 1804 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 SLC9C1Q4G0N8 1177 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 NAA16Q6N069 864 aaPredicted RBP27.92■■■□□ 2.06
PTPN4-207ENST00000460162 FASTKD5Q7L8L6 764 aaKnown RBP27.92■■■□□ 2.06
PTPN4-207ENST00000460162 TEX11Q8IYF3 940 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 ZNF333Q96JL9 665 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 ARHGAP39Q9C0H5 1083 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 SNRKQ9NRH2 765 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 CPA4Q9UI42 421 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 DBNLQ9UJU6 430 aaKnown RBP27.92■■■□□ 2.06
PTPN4-207ENST00000460162 AFG3L2Q9Y4W6 797 aa27.92■■■□□ 2.06
PTPN4-207ENST00000460162 KIAA0100Q14667 2235 aaKnown RBP27.92■■■□□ 2.06
PTPN4-207ENST00000460162 PRMT2P55345 433 aa27.91■■■□□ 2.06
PTPN4-207ENST00000460162 GPAT2Q6NUI2 795 aa27.91■■■□□ 2.06
PTPN4-207ENST00000460162 LOC285556D6RIA3 1793 aa27.91■■■□□ 2.06
PTPN4-207ENST00000460162 POTEFA5A3E0 1075 aa27.9■■■□□ 2.06
PTPN4-207ENST00000460162 BAG3O95817 575 aa27.9■■■□□ 2.06
PTPN4-207ENST00000460162 SLURP2P0DP57 97 aa27.9■■■□□ 2.06
PTPN4-207ENST00000460162 PLCG2P16885 1265 aa27.9■■■□□ 2.06
PTPN4-207ENST00000460162 NBPF11Q86T75 865 aa27.9■■■□□ 2.06
PTPN4-207ENST00000460162 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.9■■■□□ 2.06
PTPN4-207ENST00000460162 BRCA2P51587 3418 aa27.9■■■□□ 2.06
PTPN4-207ENST00000460162 MGAMO43451 1857 aa27.89■■■□□ 2.06
PTPN4-207ENST00000460162 CYP2E1P05181 493 aaPredicted RBP27.89■■■□□ 2.06
PTPN4-207ENST00000460162 MS4A1P11836 297 aa27.89■■■□□ 2.06
PTPN4-207ENST00000460162 PRPF38BQ5VTL8 546 aaKnown RBP27.89■■■□□ 2.06
PTPN4-207ENST00000460162 PANK1Q8TE04 598 aa27.89■■■□□ 2.06
PTPN4-207ENST00000460162 SLC45A1Q9Y2W3 748 aa27.89■■■□□ 2.06
PTPN4-207ENST00000460162 ERC1Q8IUD2 1116 aa27.88■■■□□ 2.05
PTPN4-207ENST00000460162 SH3RF3Q8TEJ3 882 aaPredicted RBP27.88■■■□□ 2.05
PTPN4-207ENST00000460162 AATFQ9NY61 560 aaKnown RBP eCLIP27.88■■■□□ 2.05
PTPN4-207ENST00000460162 TLR7Q9NYK1 1049 aaKnown RBP27.88■■■□□ 2.05
PTPN4-207ENST00000460162 FAM196BA6NMK8 535 aa27.87■■■□□ 2.05
PTPN4-207ENST00000460162 ZAP70P43403 619 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms