RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RANBP2P49792 3224 aaKnown RBP14.9□□□□□ -0.02
PTPRF-208ENST00000437607 ADGRA2Q96PE1 1338 aa14.9□□□□□ -0.02
PTPRF-208ENST00000437607 SLC5A1P13866 664 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 MOGSQ13724 837 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 ARHGEF6Q15052 776 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 DCAF15Q66K64 600 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 CDC42EP5Q6NZY7 148 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 C17orf99Q6UX52 265 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 WDR66Q8TBY9 1149 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 SSH3Q8TE77 659 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 SH3TC2Q8TF17 1288 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 LPIN2Q92539 896 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 HOOK2Q96ED9 719 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 TMEM106CQ9BVX2 250 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 FAM198AQ9UFP1 575 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 ALPK3Q96L96 1907 aa14.89□□□□□ -0.03
PTPRF-208ENST00000437607 MYCP01106 439 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-208ENST00000437607 PRDX5P30044 214 aa14.88□□□□□ -0.03
PTPRF-208ENST00000437607 TCP10Q12799 353 aa14.88□□□□□ -0.03
PTPRF-208ENST00000437607 OS9Q13438 667 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-208ENST00000437607 HSP90AB4PQ58FF6 505 aa14.88□□□□□ -0.03
PTPRF-208ENST00000437607 NBPF11Q86T75 865 aa14.88□□□□□ -0.03
PTPRF-208ENST00000437607 KCNH4Q9UQ05 1017 aa14.88□□□□□ -0.03
PTPRF-208ENST00000437607 ATRNL1Q5VV63 1379 aa14.87□□□□□ -0.03
PTPRF-208ENST00000437607 ECM2O94769 699 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-208ENST00000437607 ZFPM1Q8IX07 1006 aa14.87□□□□□ -0.03
PTPRF-208ENST00000437607 SMC5Q8IY18 1101 aa14.87□□□□□ -0.03
PTPRF-208ENST00000437607 SIL1Q9H173 461 aa14.87□□□□□ -0.03
PTPRF-208ENST00000437607 CPA4Q9UI42 421 aa14.87□□□□□ -0.03
PTPRF-208ENST00000437607 RFX7Q2KHR2 1363 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 LOC285556D6RIA3 1793 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 PDHXO00330 501 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 PHKA1P46020 1223 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 ATP2B3Q16720 1220 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 SLC4A8Q2Y0W8 1093 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 NOL9Q5SY16 702 aaKnown RBP14.86□□□□□ -0.03
PTPRF-208ENST00000437607 ANKRD23Q86SG2 305 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 TRIM47Q96LD4 638 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 DCTPP1Q9H773 170 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 EXOC6BQ9Y2D4 811 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 SIPA1L1O43166 1804 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 FOCADQ5VW36 1801 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 SALL1Q9NSC2 1324 aa14.86□□□□□ -0.03
PTPRF-208ENST00000437607 SURF6O75683 361 aaKnown RBP14.85□□□□□ -0.03
PTPRF-208ENST00000437607 WDHD1O75717 1129 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-208ENST00000437607 CIAO1O76071 339 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 GNRH1P01148 92 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 KIF22Q14807 665 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 MTFR1Q15390 333 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 ERC1Q8IUD2 1116 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 SHISA4Q96DD7 197 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 USP40Q9NVE5 1235 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 FBXO3Q9UK99 471 aa14.85□□□□□ -0.03
PTPRF-208ENST00000437607 PA2G4Q9UQ80 394 aaKnown RBP14.85□□□□□ -0.03
PTPRF-208ENST00000437607 PHF20L1A8MW92 1017 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 APBB1O00213 710 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 RAB11FIP3O75154 756 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 LDHBP07195 334 aaKnown RBP14.84□□□□□ -0.03
PTPRF-208ENST00000437607 OSBPP22059 807 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 ADORA1P30542 326 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 PSMC4P43686 418 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 FXR1P51114 621 aaKnown RBP eCLIP14.84□□□□□ -0.03
PTPRF-208ENST00000437607 PRMT2P55345 433 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 GPAT2Q6NUI2 795 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 SH3BP5LQ7L8J4 393 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 SRRDQ9UH36 339 aa14.84□□□□□ -0.03
PTPRF-208ENST00000437607 PLXNB2O15031 1838 aa14.83□□□□□ -0.04
PTPRF-208ENST00000437607 ZBTB22O15209 634 aa14.83□□□□□ -0.04
PTPRF-208ENST00000437607 SLURP2P0DP57 97 aa14.83□□□□□ -0.04
PTPRF-208ENST00000437607 G3BP1Q13283 466 aaKnown RBP eCLIP14.83□□□□□ -0.04
PTPRF-208ENST00000437607 COPRSQ9NQ92 184 aa14.83□□□□□ -0.04
PTPRF-208ENST00000437607 CEP126Q9P2H0 1117 aa14.83□□□□□ -0.04
PTPRF-208ENST00000437607 COLQQ9Y215 455 aaPredicted RBP14.83□□□□□ -0.04
PTPRF-208ENST00000437607 GAKO14976 1311 aa14.83□□□□□ -0.04
PTPRF-208ENST00000437607 SEMA3EO15041 775 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 BCRP11274 1271 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 IL15P40933 162 aaPredicted RBP14.82□□□□□ -0.04
PTPRF-208ENST00000437607 RGS3P49796 1198 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 ANKRD45Q5TZF3 282 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 CCDC102BQ68D86 513 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 KIF1BPQ96EK5 621 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 IDI2Q9BXS1 227 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 LRRCC1Q9C099 1032 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 DENND2AQ9ULE3 1009 aa14.82□□□□□ -0.04
PTPRF-208ENST00000437607 NOP58Q9Y2X3 529 aaKnown RBP14.82□□□□□ -0.04
PTPRF-208ENST00000437607 MAST2Q6P0Q8 1798 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 CXCL11O14625 94 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 CYP2C8P10632 490 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 MAP3K10Q02779 954 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 NUCB1Q02818 461 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 CHD1LQ86WJ1 897 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 LNPKQ9C0E8 428 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 GNL3LQ9NVN8 582 aaKnown RBP14.81□□□□□ -0.04
PTPRF-208ENST00000437607 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.81□□□□□ -0.04
PTPRF-208ENST00000437607 MYPNQ86TC9 1320 aa14.81□□□□□ -0.04
PTPRF-208ENST00000437607 A0A0G2JLL6 359 aaPredicted RBP14.8□□□□□ -0.04
PTPRF-208ENST00000437607 DDTLA6NHG4 134 aaPredicted RBP14.8□□□□□ -0.04
PTPRF-208ENST00000437607 H0YGN5 161 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 ENTPD3O75355 529 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 FMNL1O95466 1100 aaPredicted RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms