RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 ATF7IPQ6VMQ6 1270 aa16.07■□□□□ 0.16
VRK3-203ENST00000424804 YTHDC1Q96MU7 727 aaKnown RBP16.07■□□□□ 0.16
VRK3-203ENST00000424804 PTPRFP10586 1907 aa16.07■□□□□ 0.16
VRK3-203ENST00000424804 PDHXO00330 501 aa16.06■□□□□ 0.16
VRK3-203ENST00000424804 PI16Q6UXB8 463 aa16.06■□□□□ 0.16
VRK3-203ENST00000424804 HMG20BQ9P0W2 317 aa16.06■□□□□ 0.16
VRK3-203ENST00000424804 CPA4Q9UI42 421 aa16.06■□□□□ 0.16
VRK3-203ENST00000424804 GPR75-ASB3A0A0A6YYF3 556 aa16.05■□□□□ 0.16
VRK3-203ENST00000424804 CXCL11O14625 94 aa16.05■□□□□ 0.16
VRK3-203ENST00000424804 MECOMQ03112 1051 aa16.05■□□□□ 0.16
VRK3-203ENST00000424804 FTSJ3Q8IY81 847 aaKnown RBP16.05■□□□□ 0.16
VRK3-203ENST00000424804 TRIM47Q96LD4 638 aa16.05■□□□□ 0.16
VRK3-203ENST00000424804 MROH7-TTC4A0A0A0MT08 1334 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 BCRP11274 1271 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 PTPRAP18433 802 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 ZGPATQ8N5A5 531 aaKnown RBP16.04■□□□□ 0.16
VRK3-203ENST00000424804 SH3TC2Q8TF17 1288 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 NSUN4Q96CB9 384 aaKnown RBP16.04■□□□□ 0.16
VRK3-203ENST00000424804 ABCF2Q9UG63 623 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 AKAP2Q9Y2D5 859 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 AFG3L2Q9Y4W6 797 aa16.04■□□□□ 0.16
VRK3-203ENST00000424804 MGAMO43451 1857 aa16.03■□□□□ 0.16
VRK3-203ENST00000424804 ARID4AP29374 1257 aaPredicted RBP16.03■□□□□ 0.16
VRK3-203ENST00000424804 BTDP43251 543 aa16.03■□□□□ 0.16
VRK3-203ENST00000424804 ARHGEF6Q15052 776 aa16.03■□□□□ 0.16
VRK3-203ENST00000424804 SLC9C1Q4G0N8 1177 aa16.03■□□□□ 0.16
VRK3-203ENST00000424804 SCYL3Q8IZE3 742 aa16.03■□□□□ 0.16
VRK3-203ENST00000424804 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.03■□□□□ 0.16
VRK3-203ENST00000424804 DOCK3Q8IZD9 2030 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 DOCK1Q14185 1865 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 MYO5AQ9Y4I1 1855 aaKnown RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 A0A0G2JLL6 359 aaPredicted RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 NPM3O75607 178 aaKnown RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 GNRH1P01148 92 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 GNAI2P04899 355 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 OSBPP22059 807 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 MCAMP43121 646 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 POLA2Q14181 598 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 RRP1BQ14684 758 aaKnown RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 MVPQ14764 893 aaKnown RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 PRRT2Q7Z6L0 340 aaPredicted RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 DZIP1Q86YF9 867 aaKnown RBP16.02■□□□□ 0.16
VRK3-203ENST00000424804 TMEM57Q8N5G2 664 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 ZHX2Q9Y6X8 837 aa16.02■□□□□ 0.16
VRK3-203ENST00000424804 TBC1D12O60347 775 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 ECM2O94769 699 aaPredicted RBP16.01■□□□□ 0.15
VRK3-203ENST00000424804 CYP2C8P10632 490 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 PSMC4P43686 418 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 SPTY2D1Q68D10 685 aaPredicted RBP16.01■□□□□ 0.15
VRK3-203ENST00000424804 ERICH6Q7L0X2 663 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 NBPF11Q86T75 865 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 CCDC84Q86UT8 332 aaPredicted RBP16.01■□□□□ 0.15
VRK3-203ENST00000424804 SPATA5Q8NB90 893 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 NEUROD6Q96NK8 337 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 SRRDQ9UH36 339 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 CEP290O15078 2479 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 SIPA1L1O43166 1804 aa16.01■□□□□ 0.15
VRK3-203ENST00000424804 PRMT2P55345 433 aa16■□□□□ 0.15
VRK3-203ENST00000424804 PICALMQ13492 652 aa16■□□□□ 0.15
VRK3-203ENST00000424804 MTFR1Q15390 333 aa16■□□□□ 0.15
VRK3-203ENST00000424804 ITPRIPQ8IWB1 547 aa16■□□□□ 0.15
VRK3-203ENST00000424804 TMEM106CQ9BVX2 250 aa16■□□□□ 0.15
VRK3-203ENST00000424804 CTNND1O60716 968 aaKnown RBP15.99■□□□□ 0.15
VRK3-203ENST00000424804 ATP8B2P98198 1209 aa15.99■□□□□ 0.15
VRK3-203ENST00000424804 KIF22Q14807 665 aa15.99■□□□□ 0.15
VRK3-203ENST00000424804 SLF2Q8IX21 1173 aa15.99■□□□□ 0.15
VRK3-203ENST00000424804 SSH3Q8TE77 659 aa15.99■□□□□ 0.15
VRK3-203ENST00000424804 SHISA4Q96DD7 197 aa15.99■□□□□ 0.15
VRK3-203ENST00000424804 CDK5RAP2Q96SN8 1893 aa15.99■□□□□ 0.15
VRK3-203ENST00000424804 COL2A1P02458 1487 aaPredicted RBP15.98■□□□□ 0.15
VRK3-203ENST00000424804 FAM196BA6NMK8 535 aa15.98■□□□□ 0.15
VRK3-203ENST00000424804 MYCP01106 439 aaPredicted RBP15.98■□□□□ 0.15
VRK3-203ENST00000424804 RLBP1P12271 317 aa15.98■□□□□ 0.15
VRK3-203ENST00000424804 ZSCAN29Q8IWY8 852 aaPredicted RBP15.98■□□□□ 0.15
VRK3-203ENST00000424804 GPR108Q9NPR9 543 aa15.98■□□□□ 0.15
VRK3-203ENST00000424804 GABRQQ9UN88 632 aa15.98■□□□□ 0.15
VRK3-203ENST00000424804 SLC45A1Q9Y2W3 748 aa15.98■□□□□ 0.15
VRK3-203ENST00000424804 ATAD5Q96QE3 1844 aa15.97■□□□□ 0.15
VRK3-203ENST00000424804 MAP4K4O95819 1239 aaPredicted RBP15.97■□□□□ 0.15
VRK3-203ENST00000424804 G3BP1Q13283 466 aaKnown RBP eCLIP15.97■□□□□ 0.15
VRK3-203ENST00000424804 SLC4A8Q2Y0W8 1093 aa15.97■□□□□ 0.15
VRK3-203ENST00000424804 FASTKD5Q7L8L6 764 aaKnown RBP15.97■□□□□ 0.15
VRK3-203ENST00000424804 UBE2Q1Q7Z7E8 422 aa15.97■□□□□ 0.15
VRK3-203ENST00000424804 DBNDD2Q9BQY9 259 aa15.97■□□□□ 0.15
VRK3-203ENST00000424804 RCAN3Q9UKA8 241 aa15.97■□□□□ 0.15
VRK3-203ENST00000424804 ZBTB7BO15156 539 aaPredicted RBP15.96■□□□□ 0.15
VRK3-203ENST00000424804 FMNL1O95466 1100 aaPredicted RBP15.96■□□□□ 0.15
VRK3-203ENST00000424804 CYP2E1P05181 493 aaPredicted RBP15.96■□□□□ 0.15
VRK3-203ENST00000424804 LDHCP07864 332 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 GRK4P32298 578 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 JAG1P78504 1218 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 PRKCZQ05513 592 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 TNNI3KQ59H18 835 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 HABP4Q5JVS0 413 aaKnown RBP15.96■□□□□ 0.15
VRK3-203ENST00000424804 TREML2Q5T2D2 321 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 ADGRA1Q86SQ6 560 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 PANK1Q8TE04 598 aa15.96■□□□□ 0.15
VRK3-203ENST00000424804 SH3RF3Q8TEJ3 882 aaPredicted RBP15.96■□□□□ 0.15
VRK3-203ENST00000424804 PARK7Q99497 189 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms