RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CCDC102AQ96A19 550 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 MYD88Q99836 296 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 KCNH3Q9ULD8 1083 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 A0A1B0GTH6 734 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 M0R2C6 588 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 CPLX1O14810 134 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 PRC1O43663 620 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 RHOXF2BP0C7M4 288 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 FAM69CQ0P6D2 419 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 HSP90B2PQ58FF3 399 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 RAB11FIP4Q86YS3 637 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 AIFM3Q96NN9 605 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 RHOXF2Q9BQY4 288 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 GBP3Q9H0R5 595 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 FAM204AQ9H8W3 233 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 AMOTL2Q9Y2J4 779 aa12.22□□□□□ -0.45
USP54-204ENST00000422491 PHACTR2O75167 634 aa12.21□□□□□ -0.45
USP54-204ENST00000422491 PPFIA4O75335 1185 aa12.21□□□□□ -0.45
USP54-204ENST00000422491 ANTXR2P58335 489 aa12.21□□□□□ -0.45
USP54-204ENST00000422491 ZNF569Q5MCW4 686 aa12.21□□□□□ -0.45
USP54-204ENST00000422491 NT5DC1Q5TFE4 455 aa12.21□□□□□ -0.45
USP54-204ENST00000422491 RASGRP2Q7LDG7 609 aa12.21□□□□□ -0.45
USP54-204ENST00000422491 TRMT44Q8IYL2 757 aaKnown RBP12.21□□□□□ -0.45
USP54-204ENST00000422491 NAA15Q9BXJ9 866 aaKnown RBP12.21□□□□□ -0.45
USP54-204ENST00000422491 CCDC9Q9Y3X0 531 aaKnown RBP12.21□□□□□ -0.45
USP54-204ENST00000422491 NFAT5O94916 1531 aa12.21□□□□□ -0.46
USP54-204ENST00000422491 CTAGE9A4FU28 777 aa12.21□□□□□ -0.46
USP54-204ENST00000422491 ANKRD65E5RJM6 399 aa12.21□□□□□ -0.46
USP54-204ENST00000422491 RNF113AO15541 343 aaKnown RBP12.21□□□□□ -0.46
USP54-204ENST00000422491 SARSP49591 514 aaKnown RBP12.21□□□□□ -0.46
USP54-204ENST00000422491 APTXQ7Z2E3 356 aaKnown RBP12.21□□□□□ -0.46
USP54-204ENST00000422491 NUTM2AQ8IVF1 878 aaPredicted RBP12.21□□□□□ -0.46
USP54-204ENST00000422491 MLKLQ8NB16 471 aa12.21□□□□□ -0.46
USP54-204ENST00000422491 NCAPGQ9BPX3 1015 aa12.21□□□□□ -0.46
USP54-204ENST00000422491 SAMSN1Q9NSI8 373 aaKnown RBP12.21□□□□□ -0.46
USP54-204ENST00000422491 TUBBP07437 444 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 KIF4BQ2VIQ3 1234 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 AMOTQ4VCS5 1084 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 WDR93Q6P2C0 686 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 SUGP1Q8IWZ8 645 aaKnown RBP12.2□□□□□ -0.46
USP54-204ENST00000422491 EFCAB13Q8IY85 973 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 XAGE3Q8WTP9 111 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 MAP3K15Q6ZN16 1313 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 PRPF6O94906 941 aaKnown RBP12.2□□□□□ -0.46
USP54-204ENST00000422491 AARSP49588 968 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP54-204ENST00000422491 MORC3Q14149 939 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 C1orf141Q5JVX7 400 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 KRT40Q6A162 431 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 SLC35F6Q8N357 371 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 OSBP2Q969R2 916 aa12.2□□□□□ -0.46
USP54-204ENST00000422491 LRRC59Q96AG4 307 aaKnown RBP12.2□□□□□ -0.46
USP54-204ENST00000422491 CTAGE15A4D2H0 777 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 TEX33O43247 280 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 RNF40O75150 1001 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 SYF2O95926 243 aaKnown RBP12.19□□□□□ -0.46
USP54-204ENST00000422491 CTAGE8P0CG41 777 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 HAND2P61296 217 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 RBL2Q08999 1139 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 POSTNQ15063 836 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 ZNF827Q17R98 1081 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 WHAMMP3Q1A5X7 153 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 UBE3BQ7Z3V4 1068 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 CTAGE6Q86UF2 777 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 CTAGE4Q8IX94 777 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 NOA1Q8NC60 698 aaKnown RBP12.19□□□□□ -0.46
USP54-204ENST00000422491 DRC1Q96MC2 740 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 ALG1Q9BT22 464 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 PLEKHA4Q9H4M7 779 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 VIPAS39Q9H9C1 493 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 SETD1BQ9UPS6 1966 aaKnown RBP12.19□□□□□ -0.46
USP54-204ENST00000422491 C5P01031 1676 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 PRR29P0C7W0 189 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 MYL6BP14649 208 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 PBX1P40424 430 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 PIP4K2BP78356 416 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 COPS6Q7L5N1 327 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 MYCBPQ99417 103 aaPredicted RBP12.19□□□□□ -0.46
USP54-204ENST00000422491 ACBD3Q9H3P7 528 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 DACH1Q9UI36 760 aa12.19□□□□□ -0.46
USP54-204ENST00000422491 CPDO75976 1380 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 CHRM1P11229 460 aaPredicted RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 FECHP22830 423 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 IMMTQ16891 758 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 TTC39AQ5SRH9 613 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 TADA2BQ86TJ2 420 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 CDC5LQ99459 802 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 SPEF2Q9C093 1822 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 TOMM22Q9NS69 142 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 ZMYM6O95789 1325 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 WDR19Q8NEZ3 1342 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 ZC3H4Q9UPT8 1303 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 LOC102724159A0A0B4J2E5 919 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 MFAP3LO75121 409 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 ABL1P00519 1130 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 AMPD2Q01433 879 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 PWP2Q15269 919 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 SLC9C2Q5TAH2 1124 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 PLPPR3Q6T4P5 718 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 PAXIP1Q6ZW49 1069 aaPredicted RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 ATG9AQ7Z3C6 839 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms