RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 SPTY2D1Q68D10 685 aaPredicted RBP13.47□□□□□ -0.25
LINC00539-201ENST00000411525 JAG2Q9Y219 1238 aa13.47□□□□□ -0.25
LINC00539-201ENST00000411525 U3KPZ7 1027 aaPredicted RBP13.47□□□□□ -0.25
LINC00539-201ENST00000411525 ZNF646O15015 1829 aaPredicted RBP13.46□□□□□ -0.25
LINC00539-201ENST00000411525 LAMA4Q16363 1823 aa13.46□□□□□ -0.25
LINC00539-201ENST00000411525 FAM205AQ6ZU69 1335 aa13.46□□□□□ -0.25
LINC00539-201ENST00000411525 TRPA1O75762 1119 aa13.46□□□□□ -0.25
LINC00539-201ENST00000411525 NECTIN1Q15223 517 aa13.46□□□□□ -0.25
LINC00539-201ENST00000411525 RNF20Q5VTR2 975 aa13.46□□□□□ -0.25
LINC00539-201ENST00000411525 NAA16Q6N069 864 aaPredicted RBP13.46□□□□□ -0.25
LINC00539-201ENST00000411525 TMED8Q6PL24 325 aaPredicted RBP13.46□□□□□ -0.25
LINC00539-201ENST00000411525 RNF186Q9NXI6 227 aa13.46□□□□□ -0.25
LINC00539-201ENST00000411525 PDE4DIPQ5VU43 2346 aa13.46□□□□□ -0.26
LINC00539-201ENST00000411525 ASTN2O75129 1339 aaPredicted RBP13.45□□□□□ -0.26
LINC00539-201ENST00000411525 MBD4O95243 580 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 HSPD1P10809 573 aaKnown RBP13.45□□□□□ -0.26
LINC00539-201ENST00000411525 CYP7A1P22680 504 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 PRDX5P30044 214 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 NF2P35240 595 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 BECN1Q14457 450 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 VPS53Q5VIR6 699 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 STRIP1Q5VSL9 837 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 CREB3L3Q68CJ9 461 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 DZIP1Q86YF9 867 aaKnown RBP13.45□□□□□ -0.26
LINC00539-201ENST00000411525 TBC1D22AQ8WUA7 517 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 KCNB2Q92953 911 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 NSUN4Q96CB9 384 aaKnown RBP13.45□□□□□ -0.26
LINC00539-201ENST00000411525 CSRNP1Q96S65 589 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 SNX14Q9Y5W7 946 aa13.45□□□□□ -0.26
LINC00539-201ENST00000411525 SLC27A2O14975 620 aa13.44□□□□□ -0.26
LINC00539-201ENST00000411525 TNRC18O15417 2968 aaPredicted RBP13.44□□□□□ -0.26
LINC00539-201ENST00000411525 LDHBP07195 334 aaKnown RBP13.44□□□□□ -0.26
LINC00539-201ENST00000411525 MECOMQ03112 1051 aa13.44□□□□□ -0.26
LINC00539-201ENST00000411525 FOXP2O15409 715 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 ZKSCAN1P17029 563 aaPredicted RBP13.43□□□□□ -0.26
LINC00539-201ENST00000411525 MFSD14BQ5SR56 506 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 DACT2Q5SW24 774 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 ADGRA1Q86SQ6 560 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 RASAL3Q86YV0 1011 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 HSCBQ8IWL3 235 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 RASEFQ8IZ41 740 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 MIGA1Q8NAN2 632 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 ZNF384Q8TF68 577 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 FBXW7Q969H0 707 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 SNX21Q969T3 373 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 STRBPQ96SI9 672 aaKnown RBP13.43□□□□□ -0.26
LINC00539-201ENST00000411525 ARMT1Q9H993 441 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 HDAC9Q9UKV0 1011 aa13.43□□□□□ -0.26
LINC00539-201ENST00000411525 RPAP1Q9BWH6 1393 aaPredicted RBP13.43□□□□□ -0.26
LINC00539-201ENST00000411525 ZMYM6O95789 1325 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 MAGEB6P1A0A0J9YX57 407 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 GNAT2P19087 354 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 GTF2IP78347 998 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 GSTO1P78417 241 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 TTLL12Q14166 644 aaPredicted RBP13.42□□□□□ -0.26
LINC00539-201ENST00000411525 NBPF9Q3BBW0 867 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 TTLL5Q6EMB2 1281 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 LCORLQ8N3X6 602 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 RIOK1Q9BRS2 568 aaKnown RBP13.42□□□□□ -0.26
LINC00539-201ENST00000411525 TBC1D2Q9BYX2 928 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 CTNNA3Q9UI47 895 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 SUGT1Q9Y2Z0 365 aa13.42□□□□□ -0.26
LINC00539-201ENST00000411525 MYH2Q9UKX2 1941 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 WNT10BO00744 389 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 ST18O60284 1047 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 KRT32Q14532 448 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 GRIK5Q16478 980 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 CTU1Q7Z7A3 348 aaKnown RBP13.41□□□□□ -0.26
LINC00539-201ENST00000411525 IL27Q8NEV9 243 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 JAKMIP1Q96N16 626 aaKnown RBP13.41□□□□□ -0.26
LINC00539-201ENST00000411525 ECM29Q5VYK3 1845 aa13.41□□□□□ -0.26
LINC00539-201ENST00000411525 MROH7-TTC4A0A0A0MT08 1334 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 LAMB1P07942 1786 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 CYP21A2P08686 494 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 PKN2Q16513 984 aaKnown RBP13.4□□□□□ -0.26
LINC00539-201ENST00000411525 IMMTQ16891 758 aaKnown RBP13.4□□□□□ -0.26
LINC00539-201ENST00000411525 TSGA10IPQ3SY00 556 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 ARMC9Q7Z3E5 817 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 APOBEC3FQ8IUX4 373 aaKnown RBP13.4□□□□□ -0.26
LINC00539-201ENST00000411525 TM6SF1Q9BZW5 370 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 EPB41L4AQ9HCS5 686 aaPredicted RBP13.4□□□□□ -0.26
LINC00539-201ENST00000411525 DAXXQ9UER7 740 aaPredicted RBP13.4□□□□□ -0.26
LINC00539-201ENST00000411525 SLC4A4Q9Y6R1 1079 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 NAV1Q8NEY1 1877 aa13.4□□□□□ -0.26
LINC00539-201ENST00000411525 PATL2C9JE40 543 aaKnown RBP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 UBE2Q2LH0YL09 131 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 CD2BP2O95400 341 aaKnown RBP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 FGAP02671 866 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 APPP05067 770 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 LDHCP07864 332 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 PSMA5P28066 241 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 TM4SF4P48230 202 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 NEK4P51957 841 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 FKBP1AP62942 108 aaKnown RBP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 DYNLL1P63167 89 aaKnown RBP13.39□□□□□ -0.27
LINC00539-201ENST00000411525 SREBF2Q12772 1141 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 DIXDC1Q155Q3 683 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 ALX1Q15699 326 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 ADCK5Q3MIX3 580 aa13.39□□□□□ -0.27
LINC00539-201ENST00000411525 SLF2Q8IX21 1173 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms