RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CDKL5O76039 1030 aa12.95□□□□□ -0.34
TCOF1-203ENST00000394269 TM4SF1P30408 202 aa12.95□□□□□ -0.34
TCOF1-203ENST00000394269 TYRO3Q06418 890 aa12.95□□□□□ -0.34
TCOF1-203ENST00000394269 SSRP1Q08945 709 aaKnown RBP12.95□□□□□ -0.34
TCOF1-203ENST00000394269 ANO6Q4KMQ2 910 aa12.95□□□□□ -0.34
TCOF1-203ENST00000394269 PRR5LQ6MZQ0 368 aa12.95□□□□□ -0.34
TCOF1-203ENST00000394269 FBXO33Q7Z6M2 555 aa12.95□□□□□ -0.34
TCOF1-203ENST00000394269 BCL11BQ9C0K0 894 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-203ENST00000394269 ZNF219Q9P2Y4 722 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-203ENST00000394269 UFL1O94874 794 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 RTN1Q16799 776 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 ESR2Q92731 530 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 NSUN4Q96CB9 384 aaKnown RBP12.94□□□□□ -0.34
TCOF1-203ENST00000394269 NAP1L5Q96NT1 182 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-203ENST00000394269 DNAJC25Q9H1X3 360 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 RNF41Q9H4P4 317 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-203ENST00000394269 ELP1O95163 1332 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 ZMYM6O95789 1325 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 COL4A1P02462 1669 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 USP5P45974 858 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 ALX1Q15699 326 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 ISM2Q6H9L7 571 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 PCDHA7Q9UN72 937 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 SALL1Q9NSC2 1324 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 F8W031 263 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-203ENST00000394269 AKAP17AQ02040 695 aaKnown RBP12.94□□□□□ -0.34
TCOF1-203ENST00000394269 GOLPH3LQ9H4A5 285 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 TNKSO95271 1327 aa12.94□□□□□ -0.34
TCOF1-203ENST00000394269 EVCP57679 992 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 MSL1Q68DK7 614 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 RIOK1Q9BRS2 568 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 RTL9Q8NET4 1388 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 USP17L8P0C7I0 530 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 GYS1P13807 737 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 ST5P78524 1137 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 GRIK5Q16478 980 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 MYSM1Q5VVJ2 828 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 DRC7Q8IY82 874 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 TRIM22Q8IYM9 498 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 DDX19AQ9NUU7 478 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 SAP30BPQ9UHR5 308 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 RCOR1Q9UKL0 485 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 NRAPQ86VF7 1730 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 BIN1O00499 593 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 LDHBP07195 334 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 GRAPQ13588 217 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 ZRSR1Q15695 479 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 SPECC1Q5M775 1068 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 IFIT1BQ5T764 474 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 POTEAQ6S8J7 498 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 OLFM4Q6UX06 510 aa12.93□□□□□ -0.34
TCOF1-203ENST00000394269 GRAPLQ8TC17 118 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 CRNKL1Q9BZJ0 848 aaKnown RBP12.93□□□□□ -0.34
TCOF1-203ENST00000394269 MYO5AQ9Y4I1 1855 aaKnown RBP12.92□□□□□ -0.34
TCOF1-203ENST00000394269 SPTLC2O15270 562 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 CTR9Q6PD62 1173 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 ZNF654Q8IZM8 581 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 STAG1Q8WVM7 1258 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 FAM217BQ9NTX9 383 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-203ENST00000394269 PNPLA7Q6ZV29 1317 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 AKAP11Q9UKA4 1901 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 BTBD18B2RXH4 712 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 KIF23Q02241 960 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-203ENST00000394269 ZSCAN30Q86W11 494 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 IQCA1Q86XH1 822 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 MYH3P11055 1940 aa12.92□□□□□ -0.34
TCOF1-203ENST00000394269 TSPY2A6NKD2 308 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 RXRBP28702 533 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 GPSM2P81274 684 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 FANCBQ8NB91 859 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 DYNLL2Q96FJ2 89 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 CLSTN2Q9H4D0 955 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 APBA3O96018 575 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 TGFBRAP1Q8WUH2 860 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 MRVI1Q9Y6F6 885 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 COL1A1P02452 1464 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-203ENST00000394269 LIFRP42702 1097 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 ZNF165P49910 485 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 SAFBQ15424 915 aaKnown RBP eCLIP12.91□□□□□ -0.34
TCOF1-203ENST00000394269 TXNRD1Q16881 649 aa12.91□□□□□ -0.34
TCOF1-203ENST00000394269 TTC12Q9H892 705 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-203ENST00000394269 V9GY48 417 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-203ENST00000394269 PSDA5PKW4 1024 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-203ENST00000394269 NDUFA8P51970 172 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 ANO1Q5XXA6 986 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 MAPKAPK5Q8IW41 473 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 FBXL16Q8N461 479 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 LINC00301Q8NCQ3 95 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 CLIC6Q96NY7 704 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 DCP1AQ9NPI6 582 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-203ENST00000394269 NR5A1Q13285 461 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 ENAHQ8N8S7 591 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-203ENST00000394269 ZSCAN10Q96SZ4 725 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-203ENST00000394269 NOL10Q9BSC4 688 aaKnown RBP12.9□□□□□ -0.34
TCOF1-203ENST00000394269 MKNK2Q9HBH9 465 aa12.9□□□□□ -0.34
TCOF1-203ENST00000394269 BAZ2BQ9UIF8 2168 aaKnown RBP12.9□□□□□ -0.34
TCOF1-203ENST00000394269 G3V3G9 751 aa12.9□□□□□ -0.35
TCOF1-203ENST00000394269 SF3B2Q13435 895 aaKnown RBP12.9□□□□□ -0.35
TCOF1-203ENST00000394269 NTRK3Q16288 839 aa12.9□□□□□ -0.35
TCOF1-203ENST00000394269 DCAF8Q5TAQ9 597 aa12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms