RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 VGLL4Q14135 290 aa9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 MAP3K11Q16584 847 aa9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 COL13A1Q5TAT6 717 aaPredicted RBP9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 FKBP1CQ5VVH2 108 aa9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 SLF2Q8IX21 1173 aa9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 ZKSCAN4Q969J2 545 aaPredicted RBP9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 CSRNP1Q96S65 589 aa9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 RPAP1Q9BWH6 1393 aaPredicted RBP9.35□□□□□ -0.91
HMGB3P1-201ENST00000393368 OTOFQ9HC10 1997 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 FAM196BA6NMK8 535 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 LDHCP07864 332 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 HSPA8P11142 646 aaKnown RBP9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 SLC4A8Q2Y0W8 1093 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 SPRYD7Q5W111 196 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 ZSCAN29Q8IWY8 852 aaPredicted RBP9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 TEX11Q8IYF3 940 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 SLC10A4Q96EP9 437 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 WNK4Q96J92 1243 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 WRNIP1Q96S55 665 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 IDI2Q9BXS1 227 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 MYH2Q9UKX2 1941 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 ATRNL1Q5VV63 1379 aa9.34□□□□□ -0.91
HMGB3P1-201ENST00000393368 ENTPD3O75355 529 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 MAP4K4O95819 1239 aaPredicted RBP9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 ATP5JP18859 108 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 INPP5BP32019 993 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 MAPKAPK5Q8IW41 473 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 ANKRD13AQ8IZ07 590 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 TGFBRAP1Q8WUH2 860 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 OPTNQ96CV9 577 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 NOL10Q9BSC4 688 aaKnown RBP9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 BEGAINQ9BUH8 593 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 PAG1Q9NWQ8 432 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 RNF186Q9NXI6 227 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 SNCAIPQ9Y6H5 919 aa9.33□□□□□ -0.92
HMGB3P1-201ENST00000393368 ZNF532Q9HCE3 1301 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 MYO5AQ9Y4I1 1855 aaKnown RBP9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 TRPA1O75762 1119 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 BAG3O95817 575 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 IGHDP01880 384 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 PDE6AP16499 860 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 CTCFP49711 727 aaPredicted RBP9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 MAP3K9P80192 1104 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 MAP3K12Q12852 859 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 SLC9C2Q5TAH2 1124 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 ANKRD45Q5TZF3 282 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 B4GALNT3Q6L9W6 998 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 OTUD5Q96G74 571 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 HAUS7Q99871 368 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 ZNF341Q9BYN7 854 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 OSBPL5Q9H0X9 879 aaPredicted RBP9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 ECHDC1Q9NTX5 307 aa9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 SAP30BPQ9UHR5 308 aaKnown RBP9.32□□□□□ -0.92
HMGB3P1-201ENST00000393368 FLT1P17948 1338 aa9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 TCRBV5S4A2TA0A5A2 114 aa9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 PPP4CP60510 307 aa9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 HDAC1Q13547 482 aaPredicted RBP9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 TTF1Q15361 905 aaPredicted RBP9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 DCAF15Q66K64 600 aa9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 CCDC84Q86UT8 332 aaPredicted RBP9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 CSADQ9Y600 493 aa9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 DOCK2Q92608 1830 aa9.31□□□□□ -0.92
HMGB3P1-201ENST00000393368 MAGEB6P1A0A0J9YX57 407 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 IGF2BP3O00425 579 aaKnown RBP eCLIP9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 TBC1D8O95759 1140 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 ZBTB48P10074 688 aaPredicted RBP9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 EVX2Q03828 476 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 RRP1BQ14684 758 aaKnown RBP9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 LCORLQ8N3X6 602 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 PI4K2BQ8TCG2 481 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 HOOK2Q96ED9 719 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 GPATCH3Q96I76 525 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 RIOK1Q9BRS2 568 aaKnown RBP9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 LNPKQ9C0E8 428 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 R3HDMLQ9H3Y0 253 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 ARMT1Q9H993 441 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 ZNF112Q9UJU3 913 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 PALD1Q9ULE6 856 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 SALL3Q9BXA9 1300 aa9.3□□□□□ -0.92
HMGB3P1-201ENST00000393368 MANSC4A6NHS7 340 aaPredicted RBP9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 SPDYE5A6NIY4 337 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 PHF20L1A8MW92 1017 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 IRF6O14896 467 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 PRKAB2O43741 272 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 MBD4O95243 580 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 PLCG2P16885 1265 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 MX1P20591 662 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 ADD2P35612 726 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 USP5P45974 858 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 TM4SF4P48230 202 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 SREBF2Q12772 1141 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 SHROOM1Q2M3G4 852 aaPredicted RBP9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 SDR42E1Q8WUS8 393 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 GCC1Q96CN9 775 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 MS4A4AQ96JQ5 239 aa9.29□□□□□ -0.92
HMGB3P1-201ENST00000393368 PTPN18Q99952 460 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms