RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TUBB8Q3ZCM7 444 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 TRAF5O00463 557 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 GIGYF1O75420 1035 aaPredicted RBP13.9□□□□□ -0.18
VPS13A-204ENST00000376634 TMCO4Q5TGY1 634 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 AFG3L2Q9Y4W6 797 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 DENND2CQ68D51 928 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 MYO5CQ9NQX4 1742 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 ZKSCAN3Q9BRR0 538 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 STK24Q9Y6E0 443 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 CD109Q6YHK3 1445 aa13.9□□□□□ -0.18
VPS13A-204ENST00000376634 CYP26C1Q6V0L0 522 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 EXOC7Q9UPT5 735 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 TTC41PQ6P2S7 1318 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 RAB3GAP1Q15042 981 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 MGEA5O60502 916 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 RHPN1Q8TCX5 695 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 ESYT1Q9BSJ8 1104 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 HAUS3Q68CZ6 603 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 ZNF365Q70YC5 407 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 MYH11P35749 1972 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 HMGXB3Q12766 1538 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 WHAMMQ8TF30 809 aa13.89□□□□□ -0.19
VPS13A-204ENST00000376634 NAPGQ99747 312 aaPredicted RBP13.89□□□□□ -0.19
VPS13A-204ENST00000376634 TSPYL2Q9H2G4 693 aaPredicted RBP13.89□□□□□ -0.19
VPS13A-204ENST00000376634 PPP2R5DQ14738 602 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 ATL3Q6DD88 541 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 TMOD4Q9NZQ9 345 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 WDR46O15213 610 aaKnown RBP13.88□□□□□ -0.19
VPS13A-204ENST00000376634 PPP1R2P41236 205 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 STX17P56962 302 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 GTF3C6Q969F1 213 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 MUM1L1Q5H9M0 696 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 HVCN1Q96D96 273 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 RIOK3O14730 519 aaKnown RBP13.88□□□□□ -0.19
VPS13A-204ENST00000376634 PLCD1P51178 756 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 HDAC1Q13547 482 aaPredicted RBP13.88□□□□□ -0.19
VPS13A-204ENST00000376634 JARID2Q92833 1246 aaPredicted RBP13.88□□□□□ -0.19
VPS13A-204ENST00000376634 ARHGEF10LQ9HCE6 1279 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 PKD2L1Q9P0L9 805 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 NOS1P29475 1434 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 PPP4R1Q8TF05 950 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 NOC4LQ9BVI4 516 aaKnown RBP13.88□□□□□ -0.19
VPS13A-204ENST00000376634 CARD10Q9BWT7 1032 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 OGFRQ9NZT2 677 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 CCDC169A6NNP5 214 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 PPP2R5CQ13362 524 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 ASIC2Q16515 512 aa13.88□□□□□ -0.19
VPS13A-204ENST00000376634 GPHNQ9NQX3 736 aaPredicted RBP13.88□□□□□ -0.19
VPS13A-204ENST00000376634 CHMP2AO43633 222 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 CCDC38Q502W7 563 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 NIP7Q9Y221 180 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS13A-204ENST00000376634 XAGE3Q8WTP9 111 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 TUBB2AQ13885 445 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 TUBB2BQ9BVA1 445 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 ANKRD2Q9GZV1 360 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 TTLL3Q9Y4R7 772 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 HS1BP3Q53T59 392 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 LGSNQ5TDP6 509 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 MRRFQ96E11 262 aaKnown RBP13.87□□□□□ -0.19
VPS13A-204ENST00000376634 AMOTL2Q9Y2J4 779 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 SYCE1Q8N0S2 351 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 GLT8D2Q9H1C3 349 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 PPIP5K1Q6PFW1 1433 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 WHAMMP3Q1A5X7 153 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 TCEANC2Q96MN5 208 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 PLIN2Q99541 437 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 IGSF22Q8N9C0 903 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 PARP3Q9Y6F1 533 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 LAMC3Q9Y6N6 1575 aa13.87□□□□□ -0.19
VPS13A-204ENST00000376634 INPP5BP32019 993 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 ARHGAP25P42331 645 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 NMIQ13287 307 aaPredicted RBP13.86□□□□□ -0.19
VPS13A-204ENST00000376634 ZRANB1Q9UGI0 708 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 BCAP29Q9UHQ4 241 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 MYH6P13533 1939 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 POLD1P28340 1107 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 DCUN1D2Q6PH85 259 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 CROCCP2Q86T23 111 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 CLSTN2Q9H4D0 955 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 ASIC3Q9UHC3 531 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 NDUFAB1O14561 156 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 ZBTB24O43167 697 aaPredicted RBP13.86□□□□□ -0.19
VPS13A-204ENST00000376634 DIXDC1Q155Q3 683 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 ZBTB9Q96C00 473 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 KDM5BQ9UGL1 1544 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 PDE1AP54750 535 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 SLC12A2P55011 1212 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 GBP5Q96PP8 586 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 HHATQ5VTY9 493 aa13.86□□□□□ -0.19
VPS13A-204ENST00000376634 RNF10Q8N5U6 811 aaKnown RBP13.86□□□□□ -0.19
VPS13A-204ENST00000376634 DMRT2Q9Y5R5 561 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 RNF113AO15541 343 aaKnown RBP13.85□□□□□ -0.19
VPS13A-204ENST00000376634 TNFAIP3P21580 790 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 SH3BGRP55822 239 aaPredicted RBP13.85□□□□□ -0.19
VPS13A-204ENST00000376634 MAP3K21Q5TCX8 1036 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 RUFY3Q7L099 469 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 KRT28Q7Z3Y7 464 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 ZC3H12CQ9C0D7 883 aaKnown RBP13.85□□□□□ -0.19
VPS13A-204ENST00000376634 ZKSCAN5Q9Y2L8 839 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms