RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ISCA1Q9BUE6 129 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 INCENPQ9NQS7 918 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 ADAMTSL3P82987 1691 aa18.82■□□□□ 0.6
SDC4-201ENST00000372733 ZBTB43O43298 467 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 IARSP41252 1262 aaKnown RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 ADKP55263 362 aaKnown RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 GRIN1Q05586 938 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 TBX2Q13207 712 aaPredicted RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 TRIM29Q14134 588 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.81■□□□□ 0.6
SDC4-201ENST00000372733 MAN1B1Q9UKM7 699 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 ZNF142P52746 1687 aaPredicted RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 KCPQ6ZWJ8 1503 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 PARP4Q9UKK3 1724 aaKnown RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 PRR29P0C7W0 189 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 TEX35Q5T0J7 233 aa18.81■□□□□ 0.6
SDC4-201ENST00000372733 PIH1D3Q9NQM4 214 aaKnown RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 FAM217BQ9NTX9 383 aaPredicted RBP18.81■□□□□ 0.6
SDC4-201ENST00000372733 IDH1O75874 414 aaKnown RBP18.8■□□□□ 0.6
SDC4-201ENST00000372733 SASH3O75995 380 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 CREBRFQ8IUR6 639 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 STK11IPQ8N1F8 1099 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 MPHOSPH8Q99549 860 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 DESI2Q9BSY9 194 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 SLC26A6Q9BXS9 759 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.8■□□□□ 0.6
SDC4-201ENST00000372733 NFE2L3Q9Y4A8 694 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 ABCC12Q96J65 1359 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 CASQ1P31415 396 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 METTL24Q5JXM2 366 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 GRAMD1CQ8IYS0 662 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 SYNE4Q8N205 404 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 KRI1Q8N9T8 703 aaKnown RBP18.8■□□□□ 0.6
SDC4-201ENST00000372733 TC2NQ8N9U0 490 aa18.8■□□□□ 0.6
SDC4-201ENST00000372733 FAM193AP78312 1265 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 PPP2R3AQ06190 1150 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 IFIT5Q13325 482 aaKnown RBP18.79■□□□□ 0.6
SDC4-201ENST00000372733 LY9Q9HBG7 655 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 PODXL2Q9NZ53 605 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 MYO1BO43795 1136 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 TBC1D8O95759 1140 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 MDM2Q00987 491 aaPredicted RBP18.79■□□□□ 0.6
SDC4-201ENST00000372733 TMEM67Q5HYA8 995 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 IGDCC4Q8TDY8 1250 aa18.79■□□□□ 0.6
SDC4-201ENST00000372733 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.79■□□□□ 0.6
SDC4-201ENST00000372733 UBR2Q8IWV8 1755 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 TCIRG1Q13488 830 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 KARSQ15046 597 aaKnown RBP18.78■□□□□ 0.6
SDC4-201ENST00000372733 POSTNQ15063 836 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 RGS22Q8NE09 1264 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 FBXO3Q9UK99 471 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 MRFAP1Q9Y605 127 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 ZNF532Q9HCE3 1301 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 BTBD18B2RXH4 712 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 GUCY1A2P33402 732 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 MAP3K9P80192 1104 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 SPECC1LQ69YQ0 1117 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 CC2D1AQ6P1N0 951 aaPredicted RBP18.78■□□□□ 0.6
SDC4-201ENST00000372733 KIFC2Q96AC6 838 aa18.78■□□□□ 0.6
SDC4-201ENST00000372733 ATRNO75882 1429 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 ZNF18P17022 549 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 CDK11BP21127 795 aaKnown RBP18.77■□□□□ 0.6
SDC4-201ENST00000372733 TOB1P50616 345 aaPredicted RBP18.77■□□□□ 0.6
SDC4-201ENST00000372733 NOSTRINQ8IVI9 506 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 CCDC34Q96HJ3 373 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 SERTAD1Q9UHV2 236 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 WWC3Q9ULE0 1092 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 KCNJ14Q9UNX9 436 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 AKAP11Q9UKA4 1901 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 POLR2DO15514 142 aaKnown RBP18.77■□□□□ 0.6
SDC4-201ENST00000372733 MTF1Q14872 753 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 DHX58Q96C10 678 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 TMEM87BQ96K49 555 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 CALCOCO1Q9P1Z2 691 aa18.77■□□□□ 0.6
SDC4-201ENST00000372733 PLEKHG2Q9H7P9 1386 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 STX10O60499 249 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 TPM1P09493 284 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 NEK11Q8NG66 645 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 MED15Q96RN5 788 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 FBXO2Q9UK22 296 aaPredicted RBP18.76■□□□□ 0.59
SDC4-201ENST00000372733 GOLGA6L9A6NEM1 432 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 PDE6AP16499 860 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 SSRP1Q08945 709 aaKnown RBP18.76■□□□□ 0.59
SDC4-201ENST00000372733 MRPL44Q9H9J2 332 aaKnown RBP18.76■□□□□ 0.59
SDC4-201ENST00000372733 SEC31BQ9NQW1 1179 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 SAMSN1Q9NSI8 373 aaKnown RBP18.76■□□□□ 0.59
SDC4-201ENST00000372733 MYO5AQ9Y4I1 1855 aaKnown RBP18.76■□□□□ 0.59
SDC4-201ENST00000372733 PCDH11XQ9BZA7 1347 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 PCDH11YQ9BZA8 1340 aa18.76■□□□□ 0.59
SDC4-201ENST00000372733 OAS2P29728 719 aaKnown RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 LDHAL6AQ6ZMR3 332 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 SGMS1Q86VZ5 419 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 DIS3L2Q8IYB7 885 aaKnown RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 ZCCHC17Q9NP64 241 aaKnown RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 RIPOR2Q9Y4F9 1068 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 PCCAP05165 728 aaPredicted RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 CSF1RP07333 972 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 CTDSPL2Q05D32 466 aa18.75■□□□□ 0.59
SDC4-201ENST00000372733 RSRC2Q7L4I2 434 aaKnown RBP18.75■□□□□ 0.59
SDC4-201ENST00000372733 GPR161Q8N6U8 529 aaKnown RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms