RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MAN1A1P33908 653 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 SLC9C2Q5TAH2 1124 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 TSHZ3Q63HK5 1081 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 XAGE3Q8WTP9 111 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 RBM17Q96I25 401 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 JAG2Q9Y219 1238 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 ANKRD36BQ8N2N9 1353 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 NKTRP30414 1462 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 ANXA1P04083 346 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 MYCLP12524 364 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 TNFAIP3P21580 790 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 GNA11P29992 359 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 UBE2HP62256 183 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 NAP1L4Q99733 375 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 CHPF2Q9P2E5 772 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 MLH3Q9UHC1 1453 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 FAM160A1Q05DH4 1040 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 AKAP4Q5JQC9 854 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 AOPEPQ8N6M6 819 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 MRPS27Q92552 414 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 MBIPQ9NS73 344 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 TRPM2O94759 1503 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 CETN3O15182 167 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 PARP1P09874 1014 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 STX17P56962 302 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 TCIRG1Q13488 830 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 CASC4Q6P4E1 433 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 CEP128Q6ZU80 1094 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 MIGA1Q8NAN2 632 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 ZNF830Q96NB3 372 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 SAP30BPQ9UHR5 308 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 PTPDC1A2A3K4 754 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 LDHBP07195 334 aaKnown RBP11.38□□□□□ -0.59
CLIP1-202ENST00000358808 KRT19P08727 400 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 ANO6Q4KMQ2 910 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 GIMAP6Q6P9H5 292 aa11.38□□□□□ -0.59
CLIP1-202ENST00000358808 ABL1P00519 1130 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 C4orf50Q6ZRC1 276 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 SYT1P21579 422 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 AZI2Q9H6S1 392 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 CD2APQ9Y5K6 639 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 SLC12A2P55011 1212 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 TRAPPC3LQ5T215 181 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 DTHD1Q6ZMT9 781 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 COPS6Q7L5N1 327 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 FCHSD1Q86WN1 690 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 CARD10Q9BWT7 1032 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 TSGA10Q9BZW7 698 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 EXOC7Q9UPT5 735 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 CAVIN2O95810 425 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 ATP11AP98196 1134 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 Q6ZUG5 572 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 CACNA2D3Q8IZS8 1091 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 CCDC26Q8TAB7 109 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 GPCPD1Q9NPB8 672 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 KARSQ15046 597 aaKnown RBP11.37□□□□□ -0.59
CLIP1-202ENST00000358808 MAGEB6Q8N7X4 407 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 CHMP6Q96FZ7 201 aa11.37□□□□□ -0.59
CLIP1-202ENST00000358808 MGEA5O60502 916 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 SKILP12757 684 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ZNF131P52739 623 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ZYXQ15942 572 aaKnown RBP11.36□□□□□ -0.59
CLIP1-202ENST00000358808 MUM1L1Q5H9M0 696 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ZNF365Q70YC5 407 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 USTQ9Y2C2 406 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 RABGAP1Q9Y3P9 1069 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 DDX39AO00148 427 aaKnown RBP11.36□□□□□ -0.59
CLIP1-202ENST00000358808 VAV2P52735 878 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 EIF6P56537 245 aaKnown RBP11.36□□□□□ -0.59
CLIP1-202ENST00000358808 EAPPQ56P03 285 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-202ENST00000358808 TAOK1Q7L7X3 1001 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ARHGEF10LQ9HCE6 1279 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ADCY10Q96PN6 1610 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 GNAT2P19087 354 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ATP6V1E1P36543 226 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 FAM47CQ5HY64 1035 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 SH2D4BQ5SQS7 431 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 SV2BQ7L1I2 683 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 MED10Q9BTT4 135 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 RTL1A6NKG5 1358 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 GNPATO15228 680 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 PRPF6O94906 941 aaKnown RBP11.36□□□□□ -0.59
CLIP1-202ENST00000358808 DNM2P50570 870 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 TSTA3Q13630 321 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-202ENST00000358808 KIF22Q14807 665 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 ZNF569Q5MCW4 686 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 HACE1Q8IYU2 909 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 IRAK4Q9NWZ3 460 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 BTG4Q9NY30 223 aa11.36□□□□□ -0.59
CLIP1-202ENST00000358808 CDR2Q01850 454 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 MAEAQ7L5Y9 396 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 WHAMMQ8TF30 809 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 VCXQ9H320 206 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 VPS18Q9P253 973 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 RHOXF2BP0C7M4 288 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 PDE1CQ14123 709 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-202ENST00000358808 RNF169Q8NCN4 708 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 RSRC1Q96IZ7 334 aaKnown RBP11.35□□□□□ -0.59
CLIP1-202ENST00000358808 RHOXF2Q9BQY4 288 aa11.35□□□□□ -0.59
CLIP1-202ENST00000358808 LZTFL1Q9NQ48 299 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms