RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 JAK2O60674 1132 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 NFX1Q12986 1120 aaKnown RBP8.28□□□□□ -1.08
VPS13A-202ENST00000357409 CCDC122Q5T0U0 273 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 TTC22Q5TAA0 569 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 SEPT14Q6ZU15 432 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 MICALL1Q8N3F8 863 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 CHMP6Q96FZ7 201 aa8.28□□□□□ -1.08
VPS13A-202ENST00000357409 PLB1Q6P1J6 1458 aa8.27□□□□□ -1.08
VPS13A-202ENST00000357409 SKA2Q8WVK7 121 aaPredicted RBP8.27□□□□□ -1.08
VPS13A-202ENST00000357409 DCPSQ96C86 337 aaKnown RBP8.27□□□□□ -1.08
VPS13A-202ENST00000357409 IQCGQ9H095 443 aaKnown RBP8.27□□□□□ -1.08
VPS13A-202ENST00000357409 ATP6V0A2Q9Y487 856 aa8.27□□□□□ -1.08
VPS13A-202ENST00000357409 DYNLL1P63167 89 aaKnown RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 C7orf31Q8N865 590 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 BBXQ8WY36 941 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC175P0C221 793 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 PPP2R5AQ15172 486 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC117Q8IWD4 279 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 NIM1KQ8IY84 436 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 CGNQ9P2M7 1197 aaKnown RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ZSCAN12O43309 604 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 SSTR3P32745 418 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ZSCAN23Q3MJ62 389 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ANO1Q5XXA6 986 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 FAM196AQ6ZSG2 479 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ANKRD35Q8N283 1001 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 MGARPQ8TDB4 240 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 CSADQ9Y600 493 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ZSCAN22P10073 491 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ABCB4P21439 1286 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 LRRC24Q50LG9 513 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ARHGEF16Q5VV41 709 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 C17orf53Q8N3J3 647 aaPredicted RBP8.27□□□□□ -1.09
VPS13A-202ENST00000357409 USP17L12C9JPN9 530 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 USP17L21D6R901 530 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 TNNI1P19237 187 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC87Q9NVE4 849 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 FIS1Q9Y3D6 152 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ZBED4O75132 1171 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 TNFAIP3P21580 790 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 ZNF790Q6PG37 636 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 PCIF1Q9H4Z3 704 aa8.27□□□□□ -1.09
VPS13A-202ENST00000357409 GDF11O95390 407 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 STRN3Q13033 797 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 RASGRP4Q8TDF6 673 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 EYA3Q99504 573 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 TTC21AQ8NDW8 1320 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 PNMA6EA0A0J9YXQ4 647 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 SFI1A8K8P3 1242 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 HSF2BPO75031 334 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 NOC4LQ9BVI4 516 aaKnown RBP8.26□□□□□ -1.09
VPS13A-202ENST00000357409 ATP8B2P98198 1209 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 IL1RL1Q01638 556 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 KLHL7Q8IXQ5 586 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 FAM193BQ96PV7 902 aaPredicted RBP8.26□□□□□ -1.09
VPS13A-202ENST00000357409 SRP68Q9UHB9 627 aaKnown RBP8.26□□□□□ -1.09
VPS13A-202ENST00000357409 LRRC9Q6ZRR7 1453 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 F5H423 210 aaPredicted RBP8.26□□□□□ -1.09
VPS13A-202ENST00000357409 RNF113AO15541 343 aaKnown RBP8.26□□□□□ -1.09
VPS13A-202ENST00000357409 SLC1A4P43007 532 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 MTRQ99707 1265 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 CYP2J2P51589 502 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 ANO4Q32M45 955 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 NAA35Q5VZE5 725 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 FAM117BQ6P1L5 589 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 HS2ST1Q7LGA3 356 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 ZBTB33Q86T24 672 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 CEP57Q86XR8 500 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 KIAA1107Q9UPP5 1409 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 TRIM35Q9UPQ4 493 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 DISP3Q9P2K9 1392 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 SLC12A1Q13621 1099 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 PPM1EQ8WY54 764 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 CCDC127Q96BQ5 260 aa8.26□□□□□ -1.09
VPS13A-202ENST00000357409 PDE8AO60658 829 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 IL15P40933 162 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-202ENST00000357409 PRAMEF18Q5VWM3 479 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 DPP9Q86TI2 863 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 NEK11Q8NG66 645 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 RSPH14Q9UHP6 348 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 ZNF532Q9HCE3 1301 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 CRCPO75575 148 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 PUS3Q9BZE2 481 aaKnown RBP8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SCAND2PQ9GZW5 306 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-202ENST00000357409 TAOK3Q9H2K8 898 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 LRPPRCP42704 1394 aaKnown RBP8.25□□□□□ -1.09
VPS13A-202ENST00000357409 LPXNO60711 386 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 RXRBP28702 533 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 PARD3BQ8TEW8 1205 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 KIF9Q9HAQ2 790 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SEC31BQ9NQW1 1179 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 PARP2Q9UGN5 583 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 EN1Q05925 392 aaPredicted RBP8.25□□□□□ -1.09
VPS13A-202ENST00000357409 ACRBPQ8NEB7 543 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SNX29Q8TEQ0 813 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 FRMD4BQ9Y2L6 1034 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 ARHGEF35A5YM69 484 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 MEIS1O00470 390 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SNX16P57768 344 aa8.25□□□□□ -1.09
VPS13A-202ENST00000357409 SATB1Q01826 763 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms